Chemical engineering, and specially process design, synthesis and intensification, are well positioned to support both society and industry in overcoming present global challenges of environment degradation, energy supply, water scarcity and food supply. These challenges have been translated into industrial problems that involve the design of chemical processes with decreased water and energy consumption, and improved efficiencies. In this context the present study focuses on the simultaneous synthesis and design of reaction-separation systems including complex configuration distillation columns and using rigorous models. The study is considered a further step in this research area, as previous works have usually focused on the synthesis of sub-networks and have used shortcut models. Additionally, among complex configuration, thermally coupled distillation columns are reported to present significant savings in terms of the total annualised cost of the system. Among the available approaches to synthesis and design, a superstructure optimisation approach is used. The procedure involves the construction of a superstructure that includes a reaction superstructure, taken from Ma et al. (Ma et al. 2019) and a separation superstructure, proposed by Sargent and Gaminibandara (Sargent and K. Gaminibandara 1976). The modelling is performed using generalised disjunctive programming (GDP) to produce a logic-based model. This model is then reformulated into a mixed-integer nonlinear programming (MINLP) optimisation problem, where the objective is to minimise the total annualised cost of the process. For the reformulation convex hull and bypass efficiency methods are used. A modified version of the solving strategy presented by Ma et al. (Ma et al. 2019) is used, which involves using the solver SBB in General Algebraic Modelling System (GAMS). The proposed framework is applied to a case study previously addressed by Zhang et al. (Zhang et al. 2018) and Ma et al. (Ma et al. 2019). Economic models and assumptions made in those studies are maintained in order to evaluate the benefits of including complex configuration columns in the design possibilities. Results present a flowsheet with one PFR reactor and complex configuration distillation columns that are partially thermally coupled. The total annualised cost of the process is 5.85x105 $/yr, which is 6.3% and 4.7% less than the value achieved by Zhang et al. (Zhang et al. 2018)and Ma et al., respectively. Results show that it is both possible and beneficial to consider complex configuration distillation columns, including thermally coupled ones, in the simultaneous synthesis and design of reaction-separation systems using rigorous models.