Siberian sturgeon multi-tissue reference transcriptome database
- Autor(es):
- Klopp, C. ; Cabau, Cédric ; Greif, Gonzalo ; Lasalle Gerla, André Eduardo ; Di Landro Francis, Santiago ; Vizziano-Cantonnet, Denise
- Tipo:
- Artículo
- Versión:
- Publicado
- Resumen:
-
Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. Results: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. Availability: The database is publicly available at http://siberiansturgeontissuedb.sigenae.org Supplementary information: Supplementary data are available at Database online.
- Año:
- 2020
- Idioma:
- Inglés
- Temas:
- RNA sequencing
Acipenser baerii
Transcriptomics
- Institución:
- Universidad de la República
- Repositorio:
- COLIBRI
- Enlace(s):
- https://hdl.handle.net/20.500.12008/31647
- Nivel de acceso:
- Acceso abierto