A comprehensive analysis of genome composition and codon usage patterns of emerging coronaviruses

López Tort, Luis Fernando - Castells Bauer, Matías - Cristina, Juan

Resumen:

An outbreak of atypical pneumonia caused by a novel Betacoronavirus (βCoV), named SARS-CoV-2 has been declared a public health emergency of international concern by the World Health Organization. In order to gain insight into the emergence, evolution and adaptation of SARS-CoV-2 viruses, a comprehensive analysis of genome composition and codon usage of βCoV circulating in China was performed. A biased nucleotide composition was found for SARS-CoV-2 genome. This bias in genomic composition is reflected in its codon and amino acid usage patterns. The overall codon usage in SARS-CoV-2 is similar among themselves and slightly biased. Most of the highly frequent codons are A- and U-ending, which strongly suggests that mutational bias is the main force shaping codon usage in this virus. Significant differences in relative synonymous codon usage frequencies among SARS-CoV-2 and human cells were found. These differences are due to codon usage preferences.


Detalles Bibliográficos
2020
ANII; CSIC
Coronavirus
Evolution
Codon usage
Wuhan
2019-nCoV
SARS-CoV-2
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/31694
Acceso abierto
Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)