Large soybean yield gaps are related to irregular rainfall patterns in several rainfed soybean crop regions, such as southern Brazil. More efficient rainwater use can be achieved in these regions through deeper roots. Therefore, assessing the status of soybean rooting and soil-related factors that drive root growth in soybean fields is mandatory for making management decisions that minimize the yield gap. To this end, we conducted a survey in 10 fields in the state of Rio Grande do Sul (RS), Brazil, during the 2021/22 season. Undisturbed soil blocks and cores and disturbed soil samples were collected in trenches up to approximately 80 cm deep when the soybean was at the R5 stage. The roots washed from the soil blocks were scanned to determine the relative root length density (RRLD), whereas the soil cores and disturbed samples were used for physical and chemical analyses. Hierarchical cluster analysis based on the RRLD was performed to group fields according to their similarities in root distribution and soil-related factors. Soybean rooting in RS fields is quite shallow, with more than 72% of the total RRLD in all fields located within the 0–20 cm layer and less than 15% deeper than 40 cm in most fields. Chemical constraints, such as high gradient of acidity-related variables along soil profile and low concentration of nutrients below 20 cm depth, limited soybean root deepening in 50% of the fields, while physical constraints were predominant in 30% of the fields. Thus, management strategies for reducing soybean yield gap by increasing rooting depth in fields of RS need to focus on improving subsurface chemical conditions for root growth.