Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses

Do Canto Fagundez, Javier

Supervisor(es): Lübberstedt, Thomas

Resumen:

Perennial grasses have diverse uses and are relevant from the agronomic and economic point of view, with main uses as forage, turf and bioenergy. In the grass family polyploidy is prevalent and both autopolyploids and allopolyploids are present. Also, within grasses there are a range of breeding systems, but hermaphrodite flower is the most frequent floral condition. Cross-pollination in species with hermaphrodite flowers is imposed by a gametophytic genetic self-incompatibility (SI). SI is controlled by two multiallelic and independent loci, S and Z. The incompatibility phenotype of the pollen grain is determined by its haploid genome. A pollen grain is incompatible when the same S and Z alleles carried by pollen are present in the pistil. This SI mechanism keeps its functionality at higher ploidy levels. Understanding the mechanisms involved in the breakdown of SI are crucial for implementing novel breeding practices. The aim of this work is to increase the knowledge of SF in outcrossing grasses for the purpose of inbred line development and making hybrid breeding possible. Mutations at S, Z and at a third locus are known to cause self-fertility (SF). In perennial ryegrass (Lolium perenne), a locus conferring SF is located in linkage group 5. Using segregation and linkage analysis, the SF locus region was reduced to 1.6 cM. This locus explained 94% of the observed variability. By aligning the flanking marker sequences to the Brachypodium distachium reference genome, it was found that it corresponds to an 807 Kbp region in B. distachium. This locus was studied at the tetraploid level and it was found that SF remained functional, the SF locus genotype was the main determinant of pollen compatibility explaining 54% of the variation, and there is incomplete dominance between alleles at this locus in the diploid pollen grain. The prospects of migrating the SF locus from perennial ryegrass to other related self-incompatible were discussed. Based on the available information on hybridization between Lolium and Festuca species, different types of crosses were propose according to the particular species involved. The results and observations presented here contribute to a better understanding of the trait at both diploid and tetraploid levels and are promising as SF may readily be incorporated into breeding programs.


Detalles Bibliográficos
2017
Agencia Nacional de Investigación e Innovación
USDA - National Institute of Food and Agriculture
Iowa State University - Plant Sciences Institute, RF Baker Center for Plant Breeding and K.J. Frey Chair in Agronomy
INIA- Instituto Nacional de Investigación Agropecuaria
Fitomejoramiento
Self-incompatibility
Self-fertility
Segregation analysis
Perennial grasses
Hybrid breeding
Tetraploid
Agricultura, Silvicultura y Pesca
Agronomía, reproducción y protección de plantas
Ciencias Agrícolas
Inglés
Agencia Nacional de Investigación e Innovación
REDI
http://hdl.handle.net/20.500.12381/210
Acceso abierto
Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA)
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author Do Canto Fagundez, Javier
author_facet Do Canto Fagundez, Javier
author_role author
bitstream.checksum.fl_str_mv 2d97768b1a25a7df5a347bb58fd2d77f
f1298df44e92dfe1237bc559d982e843
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/210/2/license.txt
https://redi.anii.org.uy/jspui/bitstream/20.500.12381/210/1/POS_EXT_2014_1_105636.pdf
collection REDI
dc.creator.advisor.none.fl_str_mv Lübberstedt, Thomas
dc.creator.none.fl_str_mv Do Canto Fagundez, Javier
dc.date.accessioned.none.fl_str_mv 2019-11-15T19:43:07Z
dc.date.available.none.fl_str_mv 2019-11-15T19:43:07Z
dc.date.issued.none.fl_str_mv 2017
dc.description.abstract.none.fl_txt_mv Perennial grasses have diverse uses and are relevant from the agronomic and economic point of view, with main uses as forage, turf and bioenergy. In the grass family polyploidy is prevalent and both autopolyploids and allopolyploids are present. Also, within grasses there are a range of breeding systems, but hermaphrodite flower is the most frequent floral condition. Cross-pollination in species with hermaphrodite flowers is imposed by a gametophytic genetic self-incompatibility (SI). SI is controlled by two multiallelic and independent loci, S and Z. The incompatibility phenotype of the pollen grain is determined by its haploid genome. A pollen grain is incompatible when the same S and Z alleles carried by pollen are present in the pistil. This SI mechanism keeps its functionality at higher ploidy levels. Understanding the mechanisms involved in the breakdown of SI are crucial for implementing novel breeding practices. The aim of this work is to increase the knowledge of SF in outcrossing grasses for the purpose of inbred line development and making hybrid breeding possible. Mutations at S, Z and at a third locus are known to cause self-fertility (SF). In perennial ryegrass (Lolium perenne), a locus conferring SF is located in linkage group 5. Using segregation and linkage analysis, the SF locus region was reduced to 1.6 cM. This locus explained 94% of the observed variability. By aligning the flanking marker sequences to the Brachypodium distachium reference genome, it was found that it corresponds to an 807 Kbp region in B. distachium. This locus was studied at the tetraploid level and it was found that SF remained functional, the SF locus genotype was the main determinant of pollen compatibility explaining 54% of the variation, and there is incomplete dominance between alleles at this locus in the diploid pollen grain. The prospects of migrating the SF locus from perennial ryegrass to other related self-incompatible were discussed. Based on the available information on hybridization between Lolium and Festuca species, different types of crosses were propose according to the particular species involved. The results and observations presented here contribute to a better understanding of the trait at both diploid and tetraploid levels and are promising as SF may readily be incorporated into breeding programs.
dc.description.sponsorship.none.fl_txt_mv Agencia Nacional de Investigación e Innovación
USDA - National Institute of Food and Agriculture
Iowa State University - Plant Sciences Institute, RF Baker Center for Plant Breeding and K.J. Frey Chair in Agronomy
INIA- Instituto Nacional de Investigación Agropecuaria
dc.identifier.anii.es.fl_str_mv POS_EXT_2014_1_105636
dc.identifier.citation.es.fl_str_mv Do Canto Fagundez, Javier (2017). Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses (tesis de doctorado). Iowa State University. Estados Unidos.
dc.identifier.uri.none.fl_str_mv http://hdl.handle.net/20.500.12381/210
dc.language.iso.none.fl_str_mv eng
dc.publisher.es.fl_str_mv Iowa State University
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.license.none.fl_str_mv Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:REDI
instname:Agencia Nacional de Investigación e Innovación
instacron:Agencia Nacional de Investigación e Innovación
dc.subject.anii.es.fl_str_mv Agricultura, Silvicultura y Pesca
Agronomía, reproducción y protección de plantas
dc.subject.anii.none.fl_str_mv Ciencias Agrícolas
dc.subject.es.fl_str_mv Fitomejoramiento
Self-incompatibility
Self-fertility
Segregation analysis
Perennial grasses
Hybrid breeding
Tetraploid
dc.title.none.fl_str_mv Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
dc.type.es.fl_str_mv Tesis de doctorado
dc.type.none.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.version.es.fl_str_mv Publicado
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Perennial grasses have diverse uses and are relevant from the agronomic and economic point of view, with main uses as forage, turf and bioenergy. In the grass family polyploidy is prevalent and both autopolyploids and allopolyploids are present. Also, within grasses there are a range of breeding systems, but hermaphrodite flower is the most frequent floral condition. Cross-pollination in species with hermaphrodite flowers is imposed by a gametophytic genetic self-incompatibility (SI). SI is controlled by two multiallelic and independent loci, S and Z. The incompatibility phenotype of the pollen grain is determined by its haploid genome. A pollen grain is incompatible when the same S and Z alleles carried by pollen are present in the pistil. This SI mechanism keeps its functionality at higher ploidy levels. Understanding the mechanisms involved in the breakdown of SI are crucial for implementing novel breeding practices. The aim of this work is to increase the knowledge of SF in outcrossing grasses for the purpose of inbred line development and making hybrid breeding possible. Mutations at S, Z and at a third locus are known to cause self-fertility (SF). In perennial ryegrass (Lolium perenne), a locus conferring SF is located in linkage group 5. Using segregation and linkage analysis, the SF locus region was reduced to 1.6 cM. This locus explained 94% of the observed variability. By aligning the flanking marker sequences to the Brachypodium distachium reference genome, it was found that it corresponds to an 807 Kbp region in B. distachium. This locus was studied at the tetraploid level and it was found that SF remained functional, the SF locus genotype was the main determinant of pollen compatibility explaining 54% of the variation, and there is incomplete dominance between alleles at this locus in the diploid pollen grain. The prospects of migrating the SF locus from perennial ryegrass to other related self-incompatible were discussed. Based on the available information on hybridization between Lolium and Festuca species, different types of crosses were propose according to the particular species involved. The results and observations presented here contribute to a better understanding of the trait at both diploid and tetraploid levels and are promising as SF may readily be incorporated into breeding programs.
eu_rights_str_mv openAccess
format doctoralThesis
id REDI_b76b2ce8b13619dd607893fd3474a228
identifier_str_mv Do Canto Fagundez, Javier (2017). Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses (tesis de doctorado). Iowa State University. Estados Unidos.
POS_EXT_2014_1_105636
instacron_str Agencia Nacional de Investigación e Innovación
institution Agencia Nacional de Investigación e Innovación
instname_str Agencia Nacional de Investigación e Innovación
language eng
network_acronym_str REDI
network_name_str REDI
oai_identifier_str oai:redi.anii.org.uy:20.500.12381/210
publishDate 2017
reponame_str REDI
repository.mail.fl_str_mv jmaldini@anii.org.uy
repository.name.fl_str_mv REDI - Agencia Nacional de Investigación e Innovación
repository_id_str 9421
rights_invalid_str_mv Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA)
Acceso abierto
spelling Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA)Acceso abiertoinfo:eu-repo/semantics/openAccess2019-11-15T19:43:07Z2019-11-15T19:43:07Z2017Do Canto Fagundez, Javier (2017). Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses (tesis de doctorado). Iowa State University. Estados Unidos.http://hdl.handle.net/20.500.12381/210POS_EXT_2014_1_105636Perennial grasses have diverse uses and are relevant from the agronomic and economic point of view, with main uses as forage, turf and bioenergy. In the grass family polyploidy is prevalent and both autopolyploids and allopolyploids are present. Also, within grasses there are a range of breeding systems, but hermaphrodite flower is the most frequent floral condition. Cross-pollination in species with hermaphrodite flowers is imposed by a gametophytic genetic self-incompatibility (SI). SI is controlled by two multiallelic and independent loci, S and Z. The incompatibility phenotype of the pollen grain is determined by its haploid genome. A pollen grain is incompatible when the same S and Z alleles carried by pollen are present in the pistil. This SI mechanism keeps its functionality at higher ploidy levels. Understanding the mechanisms involved in the breakdown of SI are crucial for implementing novel breeding practices. The aim of this work is to increase the knowledge of SF in outcrossing grasses for the purpose of inbred line development and making hybrid breeding possible. Mutations at S, Z and at a third locus are known to cause self-fertility (SF). In perennial ryegrass (Lolium perenne), a locus conferring SF is located in linkage group 5. Using segregation and linkage analysis, the SF locus region was reduced to 1.6 cM. This locus explained 94% of the observed variability. By aligning the flanking marker sequences to the Brachypodium distachium reference genome, it was found that it corresponds to an 807 Kbp region in B. distachium. This locus was studied at the tetraploid level and it was found that SF remained functional, the SF locus genotype was the main determinant of pollen compatibility explaining 54% of the variation, and there is incomplete dominance between alleles at this locus in the diploid pollen grain. The prospects of migrating the SF locus from perennial ryegrass to other related self-incompatible were discussed. Based on the available information on hybridization between Lolium and Festuca species, different types of crosses were propose according to the particular species involved. The results and observations presented here contribute to a better understanding of the trait at both diploid and tetraploid levels and are promising as SF may readily be incorporated into breeding programs.Agencia Nacional de Investigación e InnovaciónUSDA - National Institute of Food and AgricultureIowa State University - Plant Sciences Institute, RF Baker Center for Plant Breeding and K.J. Frey Chair in AgronomyINIA- Instituto Nacional de Investigación AgropecuariaengIowa State UniversityFitomejoramientoSelf-incompatibilitySelf-fertilitySegregation analysisPerennial grassesHybrid breedingTetraploidAgricultura, Silvicultura y PescaAgronomía, reproducción y protección de plantasCiencias AgrícolasGenetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grassesTesis de doctoradoPublicadoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisreponame:REDIinstname:Agencia Nacional de Investigación e Innovacióninstacron:Agencia Nacional de Investigación e InnovaciónDo Canto Fagundez, JavierLübberstedt, ThomasLICENSElicense.txtlicense.txttext/plain; charset=utf-84746https://redi.anii.org.uy/jspui/bitstream/20.500.12381/210/2/license.txt2d97768b1a25a7df5a347bb58fd2d77fMD52ORIGINALPOS_EXT_2014_1_105636.pdfapplication/pdf1777191https://redi.anii.org.uy/jspui/bitstream/20.500.12381/210/1/POS_EXT_2014_1_105636.pdff1298df44e92dfe1237bc559d982e843MD5120.500.12381/2102020-09-25 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- Agencia Nacional de Investigación e Innovaciónfalse
spellingShingle Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
Do Canto Fagundez, Javier
Fitomejoramiento
Self-incompatibility
Self-fertility
Segregation analysis
Perennial grasses
Hybrid breeding
Tetraploid
Agricultura, Silvicultura y Pesca
Agronomía, reproducción y protección de plantas
Ciencias Agrícolas
status_str publishedVersion
title Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
title_full Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
title_fullStr Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
title_full_unstemmed Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
title_short Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
title_sort Genetic studies on self-fertility in perennial ryegrass (Lolium perenne L.) with implications for hybrid breeding in allogamous grasses
topic Fitomejoramiento
Self-incompatibility
Self-fertility
Segregation analysis
Perennial grasses
Hybrid breeding
Tetraploid
Agricultura, Silvicultura y Pesca
Agronomía, reproducción y protección de plantas
Ciencias Agrícolas
url http://hdl.handle.net/20.500.12381/210