Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences

Calleros, Lucía - Barcellos, Maila - Urioste, Victoria - Grecco, Sofía - Garzón, Juan Pablo - Lozano, Joaquín - Gastal, Gustavo

Resumen:

The microbiota composition of the bovine female reproductive tract influences reproductive efficiency, susceptibility to genital pathogens, and the health of newborn calves. However, knowledge about cervical-vaginal microbiota during gestation is scarce. Therefore, the present study aimed to analyze the taxonomic profile of the cervicalvaginal bovine microbiota throughout pregnancy and after calving using highthroughput sequencing of a fragment of the 16S ribosomal RNA gene. Healthy nulliparous Holstein heifers (n=14) with similar age (14-16 months old) and body conditional score (3-3.5, scale 1 to 5) were selected to collect samples from the cervicovaginal area with a sterile swab at 5 timepoints: day of artificial insemination (AI, estrous phase), days 30, 90, and 180 of gestation, and 60 days after calving. Libraries were prepared through PCR of the V1-V2 region of the 16S ribosomal RNA gene with illumina adapters and indexes and sequenced in an Illumina MiniSeq System. Data were analyzed using the DADA2 and vegan R Studio packages. The alpha diversity was similar among the five sampling points and between individuals. However, the relative abundance of taxa shows a temporal pattern effect, despite considerable interindividual variation. Notably, the diversity exhibits substantial variation between the AI and 30 days of gestation, followed by another shift between 180 gestational days and 60 days after calving. Several important taxa demonstrate significant changes in relative abundance. For instance, the abundance of the Lactobacillales order, typically found in the genital tract of various mammals, declined drastically (lfc= -1.94) at 180 days of gestation and after parturition (lfc=-1.70). Additionally, the Fusobacterium and Neisseria genera decreased between 90 and 180 gestational days (lfc=-2.06 and -0.77). In conclusion, our comprehensive study of the cervical-vaginal bacterial microbiota during the gestation period contributes to the knowledge of microbiota dynamics on the bovine reproductive tract during and after pregnancy.


Detalles Bibliográficos
2023
Agencia Nacional de Investigación e Innovación
microbiota
Ciencias Naturales y Exactas
Ciencias Biológicas
Genética y Herencia
Inglés
Agencia Nacional de Investigación e Innovación
REDI
https://hdl.handle.net/20.500.12381/3457
Acceso abierto
Reconocimiento-NoComercial-SinObraDerivada 4.0 Internacional. (CC BY-NC-ND)
_version_ 1814959262550458368
author Calleros, Lucía
author2 Barcellos, Maila
Urioste, Victoria
Grecco, Sofía
Garzón, Juan Pablo
Lozano, Joaquín
Gastal, Gustavo
author2_role author
author
author
author
author
author
author_facet Calleros, Lucía
Barcellos, Maila
Urioste, Victoria
Grecco, Sofía
Garzón, Juan Pablo
Lozano, Joaquín
Gastal, Gustavo
author_role author
bitstream.checksum.fl_str_mv a4ce09f01b5dd771727aa05c73851623
d36306c136a4a180a03efdb72cd8925d
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3457/2/license.txt
https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3457/1/Resumen_MEEGID-XVI_Calleros.pdf
collection REDI
dc.creator.none.fl_str_mv Calleros, Lucía
Barcellos, Maila
Urioste, Victoria
Grecco, Sofía
Garzón, Juan Pablo
Lozano, Joaquín
Gastal, Gustavo
dc.date.accessioned.none.fl_str_mv 2024-03-01T17:33:22Z
dc.date.available.none.fl_str_mv 2024-03-01T17:33:22Z
dc.date.issued.none.fl_str_mv 2023-11
dc.description.abstract.none.fl_txt_mv The microbiota composition of the bovine female reproductive tract influences reproductive efficiency, susceptibility to genital pathogens, and the health of newborn calves. However, knowledge about cervical-vaginal microbiota during gestation is scarce. Therefore, the present study aimed to analyze the taxonomic profile of the cervicalvaginal bovine microbiota throughout pregnancy and after calving using highthroughput sequencing of a fragment of the 16S ribosomal RNA gene. Healthy nulliparous Holstein heifers (n=14) with similar age (14-16 months old) and body conditional score (3-3.5, scale 1 to 5) were selected to collect samples from the cervicovaginal area with a sterile swab at 5 timepoints: day of artificial insemination (AI, estrous phase), days 30, 90, and 180 of gestation, and 60 days after calving. Libraries were prepared through PCR of the V1-V2 region of the 16S ribosomal RNA gene with illumina adapters and indexes and sequenced in an Illumina MiniSeq System. Data were analyzed using the DADA2 and vegan R Studio packages. The alpha diversity was similar among the five sampling points and between individuals. However, the relative abundance of taxa shows a temporal pattern effect, despite considerable interindividual variation. Notably, the diversity exhibits substantial variation between the AI and 30 days of gestation, followed by another shift between 180 gestational days and 60 days after calving. Several important taxa demonstrate significant changes in relative abundance. For instance, the abundance of the Lactobacillales order, typically found in the genital tract of various mammals, declined drastically (lfc= -1.94) at 180 days of gestation and after parturition (lfc=-1.70). Additionally, the Fusobacterium and Neisseria genera decreased between 90 and 180 gestational days (lfc=-2.06 and -0.77). In conclusion, our comprehensive study of the cervical-vaginal bacterial microbiota during the gestation period contributes to the knowledge of microbiota dynamics on the bovine reproductive tract during and after pregnancy.
dc.description.sponsorship.none.fl_txt_mv Agencia Nacional de Investigación e Innovación
dc.identifier.anii.es.fl_str_mv FCE_1_2019_1_155852
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12381/3457
dc.language.iso.none.fl_str_mv eng
dc.relation.uri.es.fl_str_mv https://hdl.handle.net/20.500.12381/3456
dc.rights.*.fl_str_mv Acceso abierto
dc.rights.license.none.fl_str_mv Reconocimiento-NoComercial-SinObraDerivada 4.0 Internacional. (CC BY-NC-ND)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.es.fl_str_mv 16th International Conference on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases. Dresden, Noviembre 2023
dc.source.none.fl_str_mv reponame:REDI
instname:Agencia Nacional de Investigación e Innovación
instacron:Agencia Nacional de Investigación e Innovación
dc.subject.anii.none.fl_str_mv Ciencias Naturales y Exactas
Ciencias Biológicas
Genética y Herencia
dc.subject.es.fl_str_mv microbiota
dc.title.none.fl_str_mv Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
dc.type.es.fl_str_mv Documento de conferencia
dc.type.none.fl_str_mv info:eu-repo/semantics/conferenceObject
dc.type.version.es.fl_str_mv Publicado
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description The microbiota composition of the bovine female reproductive tract influences reproductive efficiency, susceptibility to genital pathogens, and the health of newborn calves. However, knowledge about cervical-vaginal microbiota during gestation is scarce. Therefore, the present study aimed to analyze the taxonomic profile of the cervicalvaginal bovine microbiota throughout pregnancy and after calving using highthroughput sequencing of a fragment of the 16S ribosomal RNA gene. Healthy nulliparous Holstein heifers (n=14) with similar age (14-16 months old) and body conditional score (3-3.5, scale 1 to 5) were selected to collect samples from the cervicovaginal area with a sterile swab at 5 timepoints: day of artificial insemination (AI, estrous phase), days 30, 90, and 180 of gestation, and 60 days after calving. Libraries were prepared through PCR of the V1-V2 region of the 16S ribosomal RNA gene with illumina adapters and indexes and sequenced in an Illumina MiniSeq System. Data were analyzed using the DADA2 and vegan R Studio packages. The alpha diversity was similar among the five sampling points and between individuals. However, the relative abundance of taxa shows a temporal pattern effect, despite considerable interindividual variation. Notably, the diversity exhibits substantial variation between the AI and 30 days of gestation, followed by another shift between 180 gestational days and 60 days after calving. Several important taxa demonstrate significant changes in relative abundance. For instance, the abundance of the Lactobacillales order, typically found in the genital tract of various mammals, declined drastically (lfc= -1.94) at 180 days of gestation and after parturition (lfc=-1.70). Additionally, the Fusobacterium and Neisseria genera decreased between 90 and 180 gestational days (lfc=-2.06 and -0.77). In conclusion, our comprehensive study of the cervical-vaginal bacterial microbiota during the gestation period contributes to the knowledge of microbiota dynamics on the bovine reproductive tract during and after pregnancy.
eu_rights_str_mv openAccess
format conferenceObject
id REDI_a024b2164d38e83ae128bd5da24c242c
identifier_str_mv FCE_1_2019_1_155852
instacron_str Agencia Nacional de Investigación e Innovación
institution Agencia Nacional de Investigación e Innovación
instname_str Agencia Nacional de Investigación e Innovación
language eng
network_acronym_str REDI
network_name_str REDI
oai_identifier_str oai:redi.anii.org.uy:20.500.12381/3457
publishDate 2023
reponame_str REDI
repository.mail.fl_str_mv jmaldini@anii.org.uy
repository.name.fl_str_mv REDI - Agencia Nacional de Investigación e Innovación
repository_id_str 9421
rights_invalid_str_mv Reconocimiento-NoComercial-SinObraDerivada 4.0 Internacional. (CC BY-NC-ND)
Acceso abierto
spelling Reconocimiento-NoComercial-SinObraDerivada 4.0 Internacional. (CC BY-NC-ND)Acceso abiertoinfo:eu-repo/semantics/openAccess2024-03-01T17:33:22Z2024-03-01T17:33:22Z2023-11https://hdl.handle.net/20.500.12381/3457FCE_1_2019_1_155852The microbiota composition of the bovine female reproductive tract influences reproductive efficiency, susceptibility to genital pathogens, and the health of newborn calves. However, knowledge about cervical-vaginal microbiota during gestation is scarce. Therefore, the present study aimed to analyze the taxonomic profile of the cervicalvaginal bovine microbiota throughout pregnancy and after calving using highthroughput sequencing of a fragment of the 16S ribosomal RNA gene. Healthy nulliparous Holstein heifers (n=14) with similar age (14-16 months old) and body conditional score (3-3.5, scale 1 to 5) were selected to collect samples from the cervicovaginal area with a sterile swab at 5 timepoints: day of artificial insemination (AI, estrous phase), days 30, 90, and 180 of gestation, and 60 days after calving. Libraries were prepared through PCR of the V1-V2 region of the 16S ribosomal RNA gene with illumina adapters and indexes and sequenced in an Illumina MiniSeq System. Data were analyzed using the DADA2 and vegan R Studio packages. The alpha diversity was similar among the five sampling points and between individuals. However, the relative abundance of taxa shows a temporal pattern effect, despite considerable interindividual variation. Notably, the diversity exhibits substantial variation between the AI and 30 days of gestation, followed by another shift between 180 gestational days and 60 days after calving. Several important taxa demonstrate significant changes in relative abundance. For instance, the abundance of the Lactobacillales order, typically found in the genital tract of various mammals, declined drastically (lfc= -1.94) at 180 days of gestation and after parturition (lfc=-1.70). Additionally, the Fusobacterium and Neisseria genera decreased between 90 and 180 gestational days (lfc=-2.06 and -0.77). In conclusion, our comprehensive study of the cervical-vaginal bacterial microbiota during the gestation period contributes to the knowledge of microbiota dynamics on the bovine reproductive tract during and after pregnancy.Agencia Nacional de Investigación e Innovaciónenghttps://hdl.handle.net/20.500.12381/345616th International Conference on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases. Dresden, Noviembre 2023reponame:REDIinstname:Agencia Nacional de Investigación e Innovacióninstacron:Agencia Nacional de Investigación e InnovaciónmicrobiotaCiencias Naturales y ExactasCiencias BiológicasGenética y HerenciaLongitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequencesDocumento de conferenciaPublicadoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObjectUniversidad de la República. Facultad de Ciencias. Sección Genética Evolutiva.Instituto Nacional de Investigación Agropecuaria//Ciencias Naturales y Exactas/Ciencias Biológicas/Genética y HerenciaCalleros, LucíaBarcellos, MailaUrioste, VictoriaGrecco, SofíaGarzón, Juan PabloLozano, JoaquínGastal, GustavoLICENSElicense.txtlicense.txttext/plain; charset=utf-84967https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3457/2/license.txta4ce09f01b5dd771727aa05c73851623MD52ORIGINALResumen_MEEGID-XVI_Calleros.pdfResumen_MEEGID-XVI_Calleros.pdfapplication/pdf115600https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3457/1/Resumen_MEEGID-XVI_Calleros.pdfd36306c136a4a180a03efdb72cd8925dMD5120.500.12381/34572024-03-01 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Gobiernohttps://www.anii.org.uy/https://redi.anii.org.uy/oai/requestjmaldini@anii.org.uyUruguayopendoar:94212024-03-01T17:33:23REDI - Agencia Nacional de Investigación e Innovaciónfalse
spellingShingle Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
Calleros, Lucía
microbiota
Ciencias Naturales y Exactas
Ciencias Biológicas
Genética y Herencia
status_str publishedVersion
title Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
title_full Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
title_fullStr Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
title_full_unstemmed Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
title_short Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
title_sort Longitudinal study of the bovine cervical-vaginal bacterial microbiota throughout pregnancy using 16S ribosomal RNA gene sequences
topic microbiota
Ciencias Naturales y Exactas
Ciencias Biológicas
Genética y Herencia
url https://hdl.handle.net/20.500.12381/3457