Unraveling corynebacterial divisome composition by proximity labeling in the living cell
Resumen:
Bacterial cell division is directed by the divisome, a protein complex whose assembly begins with the polymerization of FtsZ at midcell to form a ring (Z-ring) This structure participates in the recruitment of other divisome proteins, that in the case of the model bacilli (Escherichia coli and Bacillus subtilis) have been identified and characterized. However, the order Corynebacteriales (that includes important human pathogens as Mycobacterium tuberculosis and Corynebacterium diphtheriae) lacks recognizable homologues for many of these cell division proteins, and the ones fulfilling these missing functions are yet to be identified. To identify the unknown pieces of the corynebacterial divisome, we developed and optimized a proteomic strategy based on proximity biotinylation in the living cell, using Corynebacterium glutamicum as a model organism. We generated a strain expressing FtsZ fused to an engineered ascorbate peroxidase (APEX2). APEX2 catalyzes the oxidation of phenol biotin in the presence of H2O2 giving rise to a radical that reacts with amino acids of nearby proteins. This allowed us to label the proteomic environment of FtsZ in the living cell, and its purification and identification by Mass Spectrometry. We corroborated that APEX2 is active in the biochemical background of C. glutamicum, and optimized the labelling strategy to guarantee the identification of physiologically relevant FtsZ neighbours. We identified a confident list of 253 FtsZ neighbors, that includes known cell division proteins as well as an important number of non-characterized proteins, which represents putative new divisome components. We focused on hypothetical membrane proteins, that might mediate membrane anchor of the Z-ring, as most of the proteins fulfilling this role in E. coli and B. subtilis are not present in corynebacterial genomes. We generate strains expressing the selected candidates fused to a fluorescent proof to evaluate their subcellular localization and their interaction with FtsZ. The results allowed us to identify new conserved membrane bound components of the corynebacterial divisome. Their precise role in cell division, the molecular details of its interaction with the Z-ring and its regulation by protein phosphorylation are being studied.
2023 | |
Agencia Nacinal de Investigación e Innovación ECOS-Sud France-Uruguay U20B02 |
|
Interactomics Cell division Mycobacteriales Ciencias Naturales y Exactas Ciencias Biológicas Bioquímica y Biología Molecular |
|
Inglés | |
Institut Pasteur de Montevideo | |
IPMON en REDI | |
https://hdl.handle.net/20.500.12381/3335 | |
Acceso abierto | |
Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA) |
_version_ | 1808165740617924608 |
---|---|
author | Rodriguez, Azalia |
author2 | Martínez, Mariano Megrian, Daniela Rossello, Jessica Gaday, Quentin Petit, Julienne Portela, Maria Magdalena Ben Assaya, Mathilde Alzari, Pedro M. Wehenkel, Anne Marie Durán, Rosario |
author2_role | author author author author author author author author author author |
author_facet | Rodriguez, Azalia Martínez, Mariano Megrian, Daniela Rossello, Jessica Gaday, Quentin Petit, Julienne Portela, Maria Magdalena Ben Assaya, Mathilde Alzari, Pedro M. Wehenkel, Anne Marie Durán, Rosario |
author_role | author |
bitstream.checksum.fl_str_mv | 710ccfef5cb01d54b75d1d847d6b6b7b d348b3d5f762b000b6e4b83464dcfec9 |
bitstream.checksumAlgorithm.fl_str_mv | MD5 MD5 |
bitstream.url.fl_str_mv | https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3335/2/license.txt https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3335/1/Abstract_SLAMTB_2023.pdf |
collection | IPMON en REDI |
dc.creator.none.fl_str_mv | Rodriguez, Azalia Martínez, Mariano Megrian, Daniela Rossello, Jessica Gaday, Quentin Petit, Julienne Portela, Maria Magdalena Ben Assaya, Mathilde Alzari, Pedro M. Wehenkel, Anne Marie Durán, Rosario |
dc.date.accessioned.none.fl_str_mv | 2023-12-04T14:13:11Z |
dc.date.available.none.fl_str_mv | 2023-12-04T14:13:11Z |
dc.date.issued.none.fl_str_mv | 2023-11-10 |
dc.description.abstract.none.fl_txt_mv | Bacterial cell division is directed by the divisome, a protein complex whose assembly begins with the polymerization of FtsZ at midcell to form a ring (Z-ring) This structure participates in the recruitment of other divisome proteins, that in the case of the model bacilli (Escherichia coli and Bacillus subtilis) have been identified and characterized. However, the order Corynebacteriales (that includes important human pathogens as Mycobacterium tuberculosis and Corynebacterium diphtheriae) lacks recognizable homologues for many of these cell division proteins, and the ones fulfilling these missing functions are yet to be identified. To identify the unknown pieces of the corynebacterial divisome, we developed and optimized a proteomic strategy based on proximity biotinylation in the living cell, using Corynebacterium glutamicum as a model organism. We generated a strain expressing FtsZ fused to an engineered ascorbate peroxidase (APEX2). APEX2 catalyzes the oxidation of phenol biotin in the presence of H2O2 giving rise to a radical that reacts with amino acids of nearby proteins. This allowed us to label the proteomic environment of FtsZ in the living cell, and its purification and identification by Mass Spectrometry. We corroborated that APEX2 is active in the biochemical background of C. glutamicum, and optimized the labelling strategy to guarantee the identification of physiologically relevant FtsZ neighbours. We identified a confident list of 253 FtsZ neighbors, that includes known cell division proteins as well as an important number of non-characterized proteins, which represents putative new divisome components. We focused on hypothetical membrane proteins, that might mediate membrane anchor of the Z-ring, as most of the proteins fulfilling this role in E. coli and B. subtilis are not present in corynebacterial genomes. We generate strains expressing the selected candidates fused to a fluorescent proof to evaluate their subcellular localization and their interaction with FtsZ. The results allowed us to identify new conserved membrane bound components of the corynebacterial divisome. Their precise role in cell division, the molecular details of its interaction with the Z-ring and its regulation by protein phosphorylation are being studied. |
dc.description.sponsorship.none.fl_txt_mv | Agencia Nacinal de Investigación e Innovación ECOS-Sud France-Uruguay U20B02 |
dc.identifier.anii.es.fl_str_mv | FCE_1_2019_1_155569 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12381/3335 |
dc.language.iso.none.fl_str_mv | eng |
dc.rights.*.fl_str_mv | Acceso abierto |
dc.rights.license.none.fl_str_mv | Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.es.fl_str_mv | XI Reunión de la Sociedad Latinoamericana de Tuberculosis y otras Micobacteriosis, Bucaramanga, Colombia, Noviembre 2023 |
dc.source.none.fl_str_mv | reponame:IPMON en REDI instname:Institut Pasteur de Montevideo instacron:Institut Pasteur de Montevideo |
dc.subject.anii.none.fl_str_mv | Ciencias Naturales y Exactas Ciencias Biológicas Bioquímica y Biología Molecular |
dc.subject.es.fl_str_mv | Interactomics Cell division Mycobacteriales |
dc.title.none.fl_str_mv | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
dc.type.es.fl_str_mv | Documento de conferencia |
dc.type.none.fl_str_mv | info:eu-repo/semantics/conferenceObject |
dc.type.version.es.fl_str_mv | Publicado |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Bacterial cell division is directed by the divisome, a protein complex whose assembly begins with the polymerization of FtsZ at midcell to form a ring (Z-ring) This structure participates in the recruitment of other divisome proteins, that in the case of the model bacilli (Escherichia coli and Bacillus subtilis) have been identified and characterized. However, the order Corynebacteriales (that includes important human pathogens as Mycobacterium tuberculosis and Corynebacterium diphtheriae) lacks recognizable homologues for many of these cell division proteins, and the ones fulfilling these missing functions are yet to be identified. To identify the unknown pieces of the corynebacterial divisome, we developed and optimized a proteomic strategy based on proximity biotinylation in the living cell, using Corynebacterium glutamicum as a model organism. We generated a strain expressing FtsZ fused to an engineered ascorbate peroxidase (APEX2). APEX2 catalyzes the oxidation of phenol biotin in the presence of H2O2 giving rise to a radical that reacts with amino acids of nearby proteins. This allowed us to label the proteomic environment of FtsZ in the living cell, and its purification and identification by Mass Spectrometry. We corroborated that APEX2 is active in the biochemical background of C. glutamicum, and optimized the labelling strategy to guarantee the identification of physiologically relevant FtsZ neighbours. We identified a confident list of 253 FtsZ neighbors, that includes known cell division proteins as well as an important number of non-characterized proteins, which represents putative new divisome components. We focused on hypothetical membrane proteins, that might mediate membrane anchor of the Z-ring, as most of the proteins fulfilling this role in E. coli and B. subtilis are not present in corynebacterial genomes. We generate strains expressing the selected candidates fused to a fluorescent proof to evaluate their subcellular localization and their interaction with FtsZ. The results allowed us to identify new conserved membrane bound components of the corynebacterial divisome. Their precise role in cell division, the molecular details of its interaction with the Z-ring and its regulation by protein phosphorylation are being studied. |
eu_rights_str_mv | openAccess |
format | conferenceObject |
id | IPMON_e5f0d12a1c0debf1c815ca1c7120d805 |
identifier_str_mv | FCE_1_2019_1_155569 |
instacron_str | Institut Pasteur de Montevideo |
institution | Institut Pasteur de Montevideo |
instname_str | Institut Pasteur de Montevideo |
language | eng |
network_acronym_str | IPMON |
network_name_str | IPMON en REDI |
oai_identifier_str | oai:redi.anii.org.uy:20.500.12381/3335 |
publishDate | 2023 |
reponame_str | IPMON en REDI |
repository.mail.fl_str_mv | msarroca@pasteur.edu.uy |
repository.name.fl_str_mv | IPMON en REDI - Institut Pasteur de Montevideo |
repository_id_str | 9421_2 |
rights_invalid_str_mv | Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA) Acceso abierto |
spelling | Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. (CC BY-NC-SA)Acceso abiertoinfo:eu-repo/semantics/openAccess2023-12-04T14:13:11Z2023-12-04T14:13:11Z2023-11-10https://hdl.handle.net/20.500.12381/3335FCE_1_2019_1_155569Bacterial cell division is directed by the divisome, a protein complex whose assembly begins with the polymerization of FtsZ at midcell to form a ring (Z-ring) This structure participates in the recruitment of other divisome proteins, that in the case of the model bacilli (Escherichia coli and Bacillus subtilis) have been identified and characterized. However, the order Corynebacteriales (that includes important human pathogens as Mycobacterium tuberculosis and Corynebacterium diphtheriae) lacks recognizable homologues for many of these cell division proteins, and the ones fulfilling these missing functions are yet to be identified. To identify the unknown pieces of the corynebacterial divisome, we developed and optimized a proteomic strategy based on proximity biotinylation in the living cell, using Corynebacterium glutamicum as a model organism. We generated a strain expressing FtsZ fused to an engineered ascorbate peroxidase (APEX2). APEX2 catalyzes the oxidation of phenol biotin in the presence of H2O2 giving rise to a radical that reacts with amino acids of nearby proteins. This allowed us to label the proteomic environment of FtsZ in the living cell, and its purification and identification by Mass Spectrometry. We corroborated that APEX2 is active in the biochemical background of C. glutamicum, and optimized the labelling strategy to guarantee the identification of physiologically relevant FtsZ neighbours. We identified a confident list of 253 FtsZ neighbors, that includes known cell division proteins as well as an important number of non-characterized proteins, which represents putative new divisome components. We focused on hypothetical membrane proteins, that might mediate membrane anchor of the Z-ring, as most of the proteins fulfilling this role in E. coli and B. subtilis are not present in corynebacterial genomes. We generate strains expressing the selected candidates fused to a fluorescent proof to evaluate their subcellular localization and their interaction with FtsZ. The results allowed us to identify new conserved membrane bound components of the corynebacterial divisome. Their precise role in cell division, the molecular details of its interaction with the Z-ring and its regulation by protein phosphorylation are being studied.Agencia Nacinal de Investigación e InnovaciónECOS-Sud France-Uruguay U20B02engXI Reunión de la Sociedad Latinoamericana de Tuberculosis y otras Micobacteriosis, Bucaramanga, Colombia, Noviembre 2023reponame:IPMON en REDIinstname:Institut Pasteur de Montevideoinstacron:Institut Pasteur de MontevideoInteractomicsCell divisionMycobacterialesCiencias Naturales y ExactasCiencias BiológicasBioquímica y Biología MolecularUnraveling corynebacterial divisome composition by proximity labeling in the living cellDocumento de conferenciaPublicadoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObjectInstitut Pasteur de MontevideoInstituto de Investigaciones Biológicas Clemente Estable//Ciencias Naturales y Exactas/Ciencias Biológicas/Bioquímica y Biología MolecularRodriguez, AzaliaMartínez, MarianoMegrian, DanielaRossello, JessicaGaday, QuentinPetit, JuliennePortela, Maria MagdalenaBen Assaya, MathildeAlzari, Pedro M.Wehenkel, Anne MarieDurán, RosarioLICENSElicense.txtlicense.txttext/plain; charset=utf-85124https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3335/2/license.txt710ccfef5cb01d54b75d1d847d6b6b7bMD52ORIGINALAbstract_SLAMTB_2023.pdfAbstract_SLAMTB_2023.pdfapplication/pdf13418https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3335/1/Abstract_SLAMTB_2023.pdfd348b3d5f762b000b6e4b83464dcfec9MD5120.500.12381/33352024-01-29 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UgbGEgY29waWEgcHJpdmFkYSwgcmVxdWVyaXLDoSBxdWUgc2UgY2l0ZSBsYSBmdWVudGUgeSBzZSByZWNvbm96Y2EgbGEgYXV0b3LDrWEuIEEgdGFsZXMgZmluZXMgZWwgQXV0b3IgYWNlcHRhIGVsIHVzbyBkZSBsaWNlbmNpYXMgQ3JlYXRpdmUgQ29tbW9ucyB5IEVMSUdFIHVuYSBkZSBlc3RhcyBsaWNlbmNpYXMgZXN0YW5kYXJpemFkYXMgYSBsb3MgZmluZXMgZGUgY29tdW5pY2FyIHN1IG9icmEuPC9wPg0KDQo8cD5FbCBBdXRvciwgY29tbyBnYXJhbnRlIGRlIGxhIGF1dG9yw61hIGRlIGxhIG9icmEgeSBlbiByZWxhY2nDs24gYSBsYSBtaXNtYSwgZGVjbGFyYSBxdWUgPGI+QU5JSTwvYj4gZSA8Yj5JUE1PTjwvYj4gc2UgZW5jdWVudHJhbiBsaWJyZXMgZGUgdG9kbyB0aXBvIGRlIHJlc3BvbnNhYmlsaWRhZCwgc2VhIMOpc3RhIGNpdmlsLCBhZG1pbmlzdHJhdGl2YSBvIHBlbmFsLCB5IHF1ZSDDqWwgbWlzbW8gYXN1bWUgbGEgcmVzcG9uc2FiaWxpZGFkIGZyZW50ZSBhIGN1YWxxdWllciByZWNsYW1vIG8gZGVtYW5kYSBwb3IgcGFydGUgZGUgdGVyY2Vyb3MuIDxiPkFOSUk8L2I+IGUgPGI+SVBNT048L2I+IGVzdGFyw6FuIGV4ZW50YXMgZGUgZWplcmNpdGFyIGFjY2lvbmVzIGxlZ2FsZXMgZW4gbm9tYnJlIGRlbCBBdXRvciBlbiBlbCBzdXB1ZXN0byBkZSBpbmZyYWNjaW9uZXMgYSBkZXJlY2hvcyBkZSBwcm9waWVkYWQgaW50ZWxlY3R1YWwgZGVyaXZhZG9zIGRlbCBkZXDDs3NpdG8geSBhcmNoaXZvIGRlIGxhIG9icmEuPC9wPg0KDQo8cD48Yj5BTklJPC9iPiBlIDxiPklQTU9OPC9iPiBub3RpZmljYXLDoW4gYWwgQXV0b3IgZGUgY3VhbHF1aWVyIHJlY2xhbWFjacOzbiBxdWUgcmVjaWJhIGRlIHRlcmNlcm9zIGVuIHJlbGFjacOzbiBjb24gbGEgb2JyYSB5LCBlbiBwYXJ0aWN1bGFyLCBkZSByZWNsYW1hY2lvbmVzIHJlbGF0aXZhcyBhIGxvcyBkZXJlY2hvcyBkZSBwcm9waWVkYWQgaW50ZWxlY3R1YWwgc29icmUgZWxsYS48L3A+DQoNCjxwPkVsIEF1dG9yIHBvZHLDoSBzb2xpY2l0YXIgZWwgcmV0aXJvIG8gbGEgaW52aXNpYmlsaXphY2nDs24gZGUgbGEgb2JyYSBkZSBSRURJIHPDs2xvIHBvciBjYXVzYSBqdXN0aWZpY2FkYS4gQSB0YWwgZmluIGRlYmVyw6EgbWFuaWZlc3RhciBzdSB2b2x1bnRhZCBlbiBmb3JtYSBmZWhhY2llbnRlIHkgYWNyZWRpdGFyIGRlYmlkYW1lbnRlIGxhIGNhdXNhIGp1c3RpZmljYWRhLiBBc2ltaXNtbyA8Yj5BTklJPC9iPiBlIDxiPklQTU9OPC9iPiBwb2Ryw6FuIHJldGlyYXIgbyBpbnZpc2liaWxpemFyIGxhIG9icmEgZGUgUkVESSwgcHJldmlhIG5vdGlmaWNhY2nDs24gYWwgQXV0b3IsIGVuIHN1cHVlc3RvcyBzdWZpY2llbnRlbWVudGUganVzdGlmaWNhZG9zLCBvIGVuIGNhc28gZGUgcmVjbGFtYWNpb25lcyBkZSB0ZXJjZXJvcy48L3A+Privadahttps://pasteur.uy/https://redi.anii.org.uy/oai/requestmsarroca@pasteur.edu.uyUruguayopendoar:9421_22024-01-29T16:00:53IPMON en REDI - Institut Pasteur de Montevideofalse |
spellingShingle | Unraveling corynebacterial divisome composition by proximity labeling in the living cell Rodriguez, Azalia Interactomics Cell division Mycobacteriales Ciencias Naturales y Exactas Ciencias Biológicas Bioquímica y Biología Molecular |
status_str | publishedVersion |
title | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
title_full | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
title_fullStr | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
title_full_unstemmed | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
title_short | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
title_sort | Unraveling corynebacterial divisome composition by proximity labeling in the living cell |
topic | Interactomics Cell division Mycobacteriales Ciencias Naturales y Exactas Ciencias Biológicas Bioquímica y Biología Molecular |
url | https://hdl.handle.net/20.500.12381/3335 |