Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A

Sastre, Santiago - Manta, Bruno - Semelak, Jonathan - Estrin, Dario - Trujillo, Madia - Radi, Rafael - Zeida, Ari

Resumen:

The oxidation of Met to methionine sulfoxide (MetSO) by oxidants such as hydrogen peroxide, hypochlorite, or peroxynitrite has profound effects on protein function. This modification can be reversed by methionine sulfoxide reductases (msr). In the context of pathogen infection, the reduction of oxidized proteins gains significance due to microbial oxidative damage generated by the immune system. For example, Mycobacterium tuberculosis (Mt) utilizes msrs (MtmsrA and MtmsrB) as part of the repair response to the host-induced oxidative stress. The absence of these enzymes makes Mycobacteria prone to increased susceptibility to cell death, pointing them out as potential therapeutic targets. This study provides a detailed characterization of the catalytic mechanism of MtmsrA using a comprehensive approach, including experimental techniques and theoretical methodologies. Confirming a ping-pong type enzymatic mechanism, we elucidate the catalytic parameters for sulfoxide and thioredoxin substrates (kcat/KM = 2656 ± 525 M-1 s-1 and 1.7 ± 0.8 × 106 M-1 s-1, respectively). Notably, the entropic nature of the activation process thermodynamics, representing ∼85% of the activation free energy at room temperature, is underscored. Furthermore, the current study questions the plausibility of a sulfurane intermediate, which may be a transition-state-like structure, suggesting the involvement of a conserved histidine residue as an acid-base catalyst in the MetSO reduction mechanism. This mechanistic insight not only advances our understanding of Mt antioxidant enzymes but also holds implications for future drug discovery and biotechnological applications.

Detalles Bibliográficos
2024
Agencia Nacional de Investigación e Innovación
Comision Sectorial de Investigacion Cientifica, Universidad de la Republica
Espacio Interdisciplinario, Universidad de la Republica
molecular dynamics
methionine sulfoxide
mechanism
Ciencias Naturales y Exactas
Ciencias Biológicas
Bioquímica y Biología Molecular
Inglés
Institut Pasteur de Montevideo
IPMON en REDI
https://hdl.handle.net/20.500.12381/3950
Acceso abierto
Reconocimiento-NoComercial 4.0 Internacional. (CC BY-NC)
_version_ 1875751077416009728
author Sastre, Santiago
author2 Manta, Bruno
Semelak, Jonathan
Estrin, Dario
Trujillo, Madia
Radi, Rafael
Zeida, Ari
author2_role author
author
author
author
author
author
author_facet Sastre, Santiago
Manta, Bruno
Semelak, Jonathan
Estrin, Dario
Trujillo, Madia
Radi, Rafael
Zeida, Ari
author_role author
bitstream.checksum.fl_str_mv 710ccfef5cb01d54b75d1d847d6b6b7b
4550a471d04cd5c2e8e02f8a3a130112
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3950/4/license.txt
https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3950/3/proof_Sastre2024.pdf
collection IPMON en REDI
dc.creator.none.fl_str_mv Sastre, Santiago
Manta, Bruno
Semelak, Jonathan
Estrin, Dario
Trujillo, Madia
Radi, Rafael
Zeida, Ari
dc.date.accessioned.none.fl_str_mv 2025-04-23T00:42:23Z
dc.date.available.none.fl_str_mv 2025-04-23T00:42:23Z
dc.date.issued.none.fl_str_mv 2024-02-20
dc.description.abstract.none.fl_txt_mv The oxidation of Met to methionine sulfoxide (MetSO) by oxidants such as hydrogen peroxide, hypochlorite, or peroxynitrite has profound effects on protein function. This modification can be reversed by methionine sulfoxide reductases (msr). In the context of pathogen infection, the reduction of oxidized proteins gains significance due to microbial oxidative damage generated by the immune system. For example, Mycobacterium tuberculosis (Mt) utilizes msrs (MtmsrA and MtmsrB) as part of the repair response to the host-induced oxidative stress. The absence of these enzymes makes Mycobacteria prone to increased susceptibility to cell death, pointing them out as potential therapeutic targets. This study provides a detailed characterization of the catalytic mechanism of MtmsrA using a comprehensive approach, including experimental techniques and theoretical methodologies. Confirming a ping-pong type enzymatic mechanism, we elucidate the catalytic parameters for sulfoxide and thioredoxin substrates (kcat/KM = 2656 ± 525 M-1 s-1 and 1.7 ± 0.8 × 106 M-1 s-1, respectively). Notably, the entropic nature of the activation process thermodynamics, representing ∼85% of the activation free energy at room temperature, is underscored. Furthermore, the current study questions the plausibility of a sulfurane intermediate, which may be a transition-state-like structure, suggesting the involvement of a conserved histidine residue as an acid-base catalyst in the MetSO reduction mechanism. This mechanistic insight not only advances our understanding of Mt antioxidant enzymes but also holds implications for future drug discovery and biotechnological applications.
dc.description.sponsorship.none.fl_txt_mv Agencia Nacional de Investigación e Innovación
Comision Sectorial de Investigacion Cientifica, Universidad de la Republica
Espacio Interdisciplinario, Universidad de la Republica
dc.identifier.doi.none.fl_str_mv 10.1021/acs.biochem.3c00504
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12381/3950
dc.language.iso.none.fl_str_mv eng
dc.publisher.es.fl_str_mv ACS Publication
dc.relation.none.fl_str_mv https://hdl.handle.net/20.500.12381/3949
https://hdl.handle.net/20.500.12381/5242
dc.rights.*.fl_str_mv Acceso abierto
dc.rights.license.none.fl_str_mv Reconocimiento-NoComercial 4.0 Internacional. (CC BY-NC)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.es.fl_str_mv Biochemistry
dc.source.none.fl_str_mv reponame:IPMON en REDI
instname:Institut Pasteur de Montevideo
instacron:Institut Pasteur de Montevideo
dc.subject.anii.none.fl_str_mv Ciencias Naturales y Exactas
Ciencias Biológicas
Bioquímica y Biología Molecular
dc.subject.es.fl_str_mv molecular dynamics
methionine sulfoxide
mechanism
dc.title.none.fl_str_mv Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.es.fl_str_mv Aceptado
dc.type.version.none.fl_str_mv info:eu-repo/semantics/acceptedVersion
description The oxidation of Met to methionine sulfoxide (MetSO) by oxidants such as hydrogen peroxide, hypochlorite, or peroxynitrite has profound effects on protein function. This modification can be reversed by methionine sulfoxide reductases (msr). In the context of pathogen infection, the reduction of oxidized proteins gains significance due to microbial oxidative damage generated by the immune system. For example, Mycobacterium tuberculosis (Mt) utilizes msrs (MtmsrA and MtmsrB) as part of the repair response to the host-induced oxidative stress. The absence of these enzymes makes Mycobacteria prone to increased susceptibility to cell death, pointing them out as potential therapeutic targets. This study provides a detailed characterization of the catalytic mechanism of MtmsrA using a comprehensive approach, including experimental techniques and theoretical methodologies. Confirming a ping-pong type enzymatic mechanism, we elucidate the catalytic parameters for sulfoxide and thioredoxin substrates (kcat/KM = 2656 ± 525 M-1 s-1 and 1.7 ± 0.8 × 106 M-1 s-1, respectively). Notably, the entropic nature of the activation process thermodynamics, representing ∼85% of the activation free energy at room temperature, is underscored. Furthermore, the current study questions the plausibility of a sulfurane intermediate, which may be a transition-state-like structure, suggesting the involvement of a conserved histidine residue as an acid-base catalyst in the MetSO reduction mechanism. This mechanistic insight not only advances our understanding of Mt antioxidant enzymes but also holds implications for future drug discovery and biotechnological applications.
eu_rights_str_mv openAccess
format article
id IPMON_851706e08f8f38f9b6ca7ed273a576b1
identifier_str_mv 10.1021/acs.biochem.3c00504
instacron_str Institut Pasteur de Montevideo
institution Institut Pasteur de Montevideo
instname_str Institut Pasteur de Montevideo
language eng
network_acronym_str IPMON
network_name_str IPMON en REDI
oai_identifier_str oai:redi.anii.org.uy:20.500.12381/3950
publishDate 2024
reponame_str IPMON en REDI
repository.mail.fl_str_mv msarroca@pasteur.edu.uy
repository.name.fl_str_mv IPMON en REDI - Institut Pasteur de Montevideo
repository_id_str 9421_2
rights_invalid_str_mv Reconocimiento-NoComercial 4.0 Internacional. (CC BY-NC)
Acceso abierto
spelling Reconocimiento-NoComercial 4.0 Internacional. (CC BY-NC)Acceso abiertoinfo:eu-repo/semantics/openAccess2025-04-23T00:42:23Z2025-04-23T00:42:23Z2024-02-20https://hdl.handle.net/20.500.12381/395010.1021/acs.biochem.3c00504The oxidation of Met to methionine sulfoxide (MetSO) by oxidants such as hydrogen peroxide, hypochlorite, or peroxynitrite has profound effects on protein function. This modification can be reversed by methionine sulfoxide reductases (msr). In the context of pathogen infection, the reduction of oxidized proteins gains significance due to microbial oxidative damage generated by the immune system. For example, Mycobacterium tuberculosis (Mt) utilizes msrs (MtmsrA and MtmsrB) as part of the repair response to the host-induced oxidative stress. The absence of these enzymes makes Mycobacteria prone to increased susceptibility to cell death, pointing them out as potential therapeutic targets. This study provides a detailed characterization of the catalytic mechanism of MtmsrA using a comprehensive approach, including experimental techniques and theoretical methodologies. Confirming a ping-pong type enzymatic mechanism, we elucidate the catalytic parameters for sulfoxide and thioredoxin substrates (kcat/KM = 2656 ± 525 M-1 s-1 and 1.7 ± 0.8 × 106 M-1 s-1, respectively). Notably, the entropic nature of the activation process thermodynamics, representing ∼85% of the activation free energy at room temperature, is underscored. Furthermore, the current study questions the plausibility of a sulfurane intermediate, which may be a transition-state-like structure, suggesting the involvement of a conserved histidine residue as an acid-base catalyst in the MetSO reduction mechanism. This mechanistic insight not only advances our understanding of Mt antioxidant enzymes but also holds implications for future drug discovery and biotechnological applications.Agencia Nacional de Investigación e InnovaciónComision Sectorial de Investigacion Cientifica, Universidad de la RepublicaEspacio Interdisciplinario, Universidad de la RepublicaengACS Publicationhttps://hdl.handle.net/20.500.12381/3949https://hdl.handle.net/20.500.12381/5242Biochemistryreponame:IPMON en REDIinstname:Institut Pasteur de Montevideoinstacron:Institut Pasteur de Montevideomolecular dynamicsmethionine sulfoxidemechanismCiencias Naturales y ExactasCiencias BiológicasBioquímica y Biología MolecularCatalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase AArtículoAceptadoinfo:eu-repo/semantics/acceptedVersioninfo:eu-repo/semantics/articleCentro de Investigaciones Biomédicas (CEINBIO), Facultad de Medicina, Universidad de la RepúblicaDepartamento de Bioquímica, Facultad de Medicina, Universidad de la RepúblicaCátedra de Fisiopatología, Facultad de Odontología, Universidad de la RepúblicaDepartamento de Química Inorgánica, Analítica y Química Física, Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires and CONICETInstitut Pasteur de Montevideo, Montevideo, Uruguay//Ciencias Naturales y Exactas/Ciencias Biológicas/Bioquímica y Biología MolecularSastre, SantiagoManta, BrunoSemelak, JonathanEstrin, DarioTrujillo, MadiaRadi, RafaelZeida, AriLICENSElicense.txtlicense.txttext/plain; charset=utf-85124https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3950/4/license.txt710ccfef5cb01d54b75d1d847d6b6b7bMD54ORIGINALproof_Sastre2024.pdfproof_Sastre2024.pdfapplication/pdf7493248https://redi.anii.org.uy/jspui/bitstream/20.500.12381/3950/3/proof_Sastre2024.pdf4550a471d04cd5c2e8e02f8a3a130112MD5320.500.12381/39502025-10-22 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://hdl.handle.net/20.500.12381/575Organismo científico-tecnológicohttps://pasteur.uy/https://redi.anii.org.uy/oai/requestmsarroca@pasteur.edu.uyUruguayopendoar:9421_22025-10-22T17:50:50IPMON en REDI - Institut Pasteur de Montevideofalse
spellingShingle Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
Sastre, Santiago
molecular dynamics
methionine sulfoxide
mechanism
Ciencias Naturales y Exactas
Ciencias Biológicas
Bioquímica y Biología Molecular
status_str acceptedVersion
title Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
title_full Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
title_fullStr Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
title_full_unstemmed Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
title_short Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
title_sort Catalytic Mechanism of Mycobacterium tuberculosis Methionine Sulfoxide Reductase A
topic molecular dynamics
methionine sulfoxide
mechanism
Ciencias Naturales y Exactas
Ciencias Biológicas
Bioquímica y Biología Molecular
url https://hdl.handle.net/20.500.12381/3950