Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.

GASO, D. - DE WIT, A. - BERGER, A. - KOOISTRA, L.

Resumen:

ABSTRACT: Accurate within-field yield estimation is an essential step to conduct yield gap analysis and steer crop management towards more efficient use of resources. This study aims to develop and validate a process-based soybean model and to predict within-field yield variability by coupling leaf area index (LAI) retrieval from Sentinel-2 into the crop model. First, a soybean model is presented, which was successfully validated with field observations of total aboveground biomass, LAI and yield from seven contrasting field campaigns with strongly varying conditions. Within-field yield predictions were achieved by combining the model and the observations of LAI through an assimilation strategy. Four model parameters were chosen to optimize against the LAI curve: soil depth, field capacity, initial LAI and nitrogen translocated from leaves to seed. Six fields were used to evaluate the methodology (21175 pixels). The accuracy assessment was conducted on a pixel-by-pixel basis using high density of information from the yield monitor. The overall accuracy quantified by the relative root mean square error (rRMSE) ranged from 28 to 51% (overall rRMSE 35.8%) across the studied fields. The Lee statistics index ranged from 0.61 to 0.71, confirming a high level of similarity between observed and simulated yield maps. Therefore, the methodology was capable of representing the observed spatial patterns of yield. Furthermore, the high consistency of the optimized WHC reflects the value of the assimilation data strategy to spatialize this relevant characteristic. Some challenges were identified for further study to reduce the sources of uncertainty and improve accuracy: i) the inability of the model to reallocate biomass by simulating plant response to source limitation, ii) the generalization of empirical algorithms to retrieve LAI, and iii) the exploration of an updating method as an assimilation strategy to overcome discrepancy between simulated and retrieved LAI.


Detalles Bibliográficos
2021
Yield prediction
Crop growth model
Sentinel-2
Data assimilation
Soybean
Soja
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62331&biblioteca=vazio&busca=62331&qFacets=62331
Acceso abierto
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author GASO, D.
author2 DE WIT, A.
BERGER, A.
KOOISTRA, L.
author2_role author
author
author
author_facet GASO, D.
DE WIT, A.
BERGER, A.
KOOISTRA, L.
author_role author
bitstream.checksum.fl_str_mv 21bb84b0a047f31e08342892d0fbad1a
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1914/1/sword-2022-10-20T22%3a54%3a47.original.xml
collection AINFO
dc.creator.none.fl_str_mv GASO, D.
DE WIT, A.
BERGER, A.
KOOISTRA, L.
dc.date.accessioned.none.fl_str_mv 2022-10-21T01:54:47Z
dc.date.available.none.fl_str_mv 2022-10-21T01:54:47Z
dc.date.issued.none.fl_str_mv 2021
dc.date.updated.none.fl_str_mv 2022-10-21T01:54:47Z
dc.description.abstract.none.fl_txt_mv ABSTRACT: Accurate within-field yield estimation is an essential step to conduct yield gap analysis and steer crop management towards more efficient use of resources. This study aims to develop and validate a process-based soybean model and to predict within-field yield variability by coupling leaf area index (LAI) retrieval from Sentinel-2 into the crop model. First, a soybean model is presented, which was successfully validated with field observations of total aboveground biomass, LAI and yield from seven contrasting field campaigns with strongly varying conditions. Within-field yield predictions were achieved by combining the model and the observations of LAI through an assimilation strategy. Four model parameters were chosen to optimize against the LAI curve: soil depth, field capacity, initial LAI and nitrogen translocated from leaves to seed. Six fields were used to evaluate the methodology (21175 pixels). The accuracy assessment was conducted on a pixel-by-pixel basis using high density of information from the yield monitor. The overall accuracy quantified by the relative root mean square error (rRMSE) ranged from 28 to 51% (overall rRMSE 35.8%) across the studied fields. The Lee statistics index ranged from 0.61 to 0.71, confirming a high level of similarity between observed and simulated yield maps. Therefore, the methodology was capable of representing the observed spatial patterns of yield. Furthermore, the high consistency of the optimized WHC reflects the value of the assimilation data strategy to spatialize this relevant characteristic. Some challenges were identified for further study to reduce the sources of uncertainty and improve accuracy: i) the inability of the model to reallocate biomass by simulating plant response to source limitation, ii) the generalization of empirical algorithms to retrieve LAI, and iii) the exploration of an updating method as an assimilation strategy to overcome discrepancy between simulated and retrieved LAI.
dc.identifier.none.fl_str_mv http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62331&biblioteca=vazio&busca=62331&qFacets=62331
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv Yield prediction
Crop growth model
Sentinel-2
Data assimilation
Soybean
Soja
dc.title.none.fl_str_mv Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description ABSTRACT: Accurate within-field yield estimation is an essential step to conduct yield gap analysis and steer crop management towards more efficient use of resources. This study aims to develop and validate a process-based soybean model and to predict within-field yield variability by coupling leaf area index (LAI) retrieval from Sentinel-2 into the crop model. First, a soybean model is presented, which was successfully validated with field observations of total aboveground biomass, LAI and yield from seven contrasting field campaigns with strongly varying conditions. Within-field yield predictions were achieved by combining the model and the observations of LAI through an assimilation strategy. Four model parameters were chosen to optimize against the LAI curve: soil depth, field capacity, initial LAI and nitrogen translocated from leaves to seed. Six fields were used to evaluate the methodology (21175 pixels). The accuracy assessment was conducted on a pixel-by-pixel basis using high density of information from the yield monitor. The overall accuracy quantified by the relative root mean square error (rRMSE) ranged from 28 to 51% (overall rRMSE 35.8%) across the studied fields. The Lee statistics index ranged from 0.61 to 0.71, confirming a high level of similarity between observed and simulated yield maps. Therefore, the methodology was capable of representing the observed spatial patterns of yield. Furthermore, the high consistency of the optimized WHC reflects the value of the assimilation data strategy to spatialize this relevant characteristic. Some challenges were identified for further study to reduce the sources of uncertainty and improve accuracy: i) the inability of the model to reallocate biomass by simulating plant response to source limitation, ii) the generalization of empirical algorithms to retrieve LAI, and iii) the exploration of an updating method as an assimilation strategy to overcome discrepancy between simulated and retrieved LAI.
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repository.name.fl_str_mv AINFO - Instituto Nacional de Investigación Agropecuaria
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spelling 2022-10-21T01:54:47Z2022-10-21T01:54:47Z20212022-10-21T01:54:47Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=62331&biblioteca=vazio&busca=62331&qFacets=62331ABSTRACT: Accurate within-field yield estimation is an essential step to conduct yield gap analysis and steer crop management towards more efficient use of resources. This study aims to develop and validate a process-based soybean model and to predict within-field yield variability by coupling leaf area index (LAI) retrieval from Sentinel-2 into the crop model. First, a soybean model is presented, which was successfully validated with field observations of total aboveground biomass, LAI and yield from seven contrasting field campaigns with strongly varying conditions. Within-field yield predictions were achieved by combining the model and the observations of LAI through an assimilation strategy. Four model parameters were chosen to optimize against the LAI curve: soil depth, field capacity, initial LAI and nitrogen translocated from leaves to seed. Six fields were used to evaluate the methodology (21175 pixels). The accuracy assessment was conducted on a pixel-by-pixel basis using high density of information from the yield monitor. The overall accuracy quantified by the relative root mean square error (rRMSE) ranged from 28 to 51% (overall rRMSE 35.8%) across the studied fields. The Lee statistics index ranged from 0.61 to 0.71, confirming a high level of similarity between observed and simulated yield maps. Therefore, the methodology was capable of representing the observed spatial patterns of yield. Furthermore, the high consistency of the optimized WHC reflects the value of the assimilation data strategy to spatialize this relevant characteristic. Some challenges were identified for further study to reduce the sources of uncertainty and improve accuracy: i) the inability of the model to reallocate biomass by simulating plant response to source limitation, ii) the generalization of empirical algorithms to retrieve LAI, and iii) the exploration of an updating method as an assimilation strategy to overcome discrepancy between simulated and retrieved LAI.https://hdl.handle.net/20.500.12381/1914enenginfo:eu-repo/semantics/openAccessAcceso abiertoYield predictionCrop growth modelSentinel-2Data assimilationSoybeanSojaPredicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaGASO, D.DE WIT, A.BERGER, A.KOOISTRA, L.SWORDsword-2022-10-20T22:54:47.original.xmlOriginal SWORD entry documentapplication/octet-stream3155https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1914/1/sword-2022-10-20T22%3a54%3a47.original.xml21bb84b0a047f31e08342892d0fbad1aMD5120.500.12381/19142022-10-20 22:54:48.02oai:redi.anii.org.uy:20.500.12381/1914Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:54:48AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
GASO, D.
Yield prediction
Crop growth model
Sentinel-2
Data assimilation
Soybean
Soja
status_str publishedVersion
title Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
title_full Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
title_fullStr Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
title_full_unstemmed Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
title_short Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
title_sort Predicting within-field soybean yield variability by coupling Sentinel-2 leaf area index with a crop growth model.
topic Yield prediction
Crop growth model
Sentinel-2
Data assimilation
Soybean
Soja
url http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62331&biblioteca=vazio&busca=62331&qFacets=62331