Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.

MEDEROS, A. - GALARRAGA, D. - VAN DER GRAAF-VAN BLOOIS, L. - BUCZINSKI, S.

Resumen:

The sensitivity (Se) and specificity (Sp) of three diagnostic tests for the detection of Campylobacter fetus venerealis (Cfv) using field samples were estimated using a Bayesian latent class model (BLCM), accounting for the absence of a gold standard. The tests included in this study were direct immunofluorescence antibody test (IFAT), polymerase chain reaction (PCR), and real-time PCR (RT-PCR). Twelve farms from two different populations were selected and bull prepuce samples were collected. The IFAT was performed according to the OIE Manual. The conventional PCR was performed as multiplex, targeting the gene nahE for C. fetus species identification and insertion element ISCfe1 for Cfv identification. The RT-PCR was performed as uniplex: one targeting the gene nahE for C. fetus and the other targeting the insertion ISCfe1 (ISC2) for Cfv. Results from the BLCM showed a median Se of 11.7% (Bayesian credibility interval (BCI): 1.93?29.79%), 53.7% (BCI: 23.1?95.0%), and 36.1% (BCI: 14.5?71.7%) for IFAT, PCR, and RT-PCR respectively. The Sp were 94.5% (BCI: 90.1?97.9%), 97.0% (BCI: 92.9?99.3%), and 98.4% (BCI: 95.3?99.7%) for IFAT, PCR, and RT-PCR respectively. The correlation between PCR and RT-PCR was positive and low in samples from both sampled population (0.63% vs 8.47%). These results suggest that diagnostic sensitivity of the studied tests is lower using field samples than using pure Cfv strains.


Detalles Bibliográficos
2022
BEEF CATTLE
CAMPYLOBACTER FETUS
Campylobacter fetus subsp. venerealis
FIELD SAMPLES
LATENT CLASS MODEL
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62634&biblioteca=vazio&busca=62634&qFacets=62634
Acceso abierto
_version_ 1805580530914164736
author MEDEROS, A.
author2 GALARRAGA, D.
VAN DER GRAAF-VAN BLOOIS, L.
BUCZINSKI, S.
author2_role author
author
author
author_facet MEDEROS, A.
GALARRAGA, D.
VAN DER GRAAF-VAN BLOOIS, L.
BUCZINSKI, S.
author_role author
bitstream.checksum.fl_str_mv c779bdbb89a6e61622e3b9d2ef02ccf6
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/2074/1/sword-2022-10-20T22%3a59%3a50.original.xml
collection AINFO
dc.creator.none.fl_str_mv MEDEROS, A.
GALARRAGA, D.
VAN DER GRAAF-VAN BLOOIS, L.
BUCZINSKI, S.
dc.date.accessioned.none.fl_str_mv 2022-10-21T01:59:50Z
dc.date.available.none.fl_str_mv 2022-10-21T01:59:50Z
dc.date.issued.none.fl_str_mv 2022
dc.date.updated.none.fl_str_mv 2022-10-21T01:59:50Z
dc.description.abstract.none.fl_txt_mv The sensitivity (Se) and specificity (Sp) of three diagnostic tests for the detection of Campylobacter fetus venerealis (Cfv) using field samples were estimated using a Bayesian latent class model (BLCM), accounting for the absence of a gold standard. The tests included in this study were direct immunofluorescence antibody test (IFAT), polymerase chain reaction (PCR), and real-time PCR (RT-PCR). Twelve farms from two different populations were selected and bull prepuce samples were collected. The IFAT was performed according to the OIE Manual. The conventional PCR was performed as multiplex, targeting the gene nahE for C. fetus species identification and insertion element ISCfe1 for Cfv identification. The RT-PCR was performed as uniplex: one targeting the gene nahE for C. fetus and the other targeting the insertion ISCfe1 (ISC2) for Cfv. Results from the BLCM showed a median Se of 11.7% (Bayesian credibility interval (BCI): 1.93?29.79%), 53.7% (BCI: 23.1?95.0%), and 36.1% (BCI: 14.5?71.7%) for IFAT, PCR, and RT-PCR respectively. The Sp were 94.5% (BCI: 90.1?97.9%), 97.0% (BCI: 92.9?99.3%), and 98.4% (BCI: 95.3?99.7%) for IFAT, PCR, and RT-PCR respectively. The correlation between PCR and RT-PCR was positive and low in samples from both sampled population (0.63% vs 8.47%). These results suggest that diagnostic sensitivity of the studied tests is lower using field samples than using pure Cfv strains.
dc.identifier.none.fl_str_mv http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62634&biblioteca=vazio&busca=62634&qFacets=62634
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv BEEF CATTLE
CAMPYLOBACTER FETUS
Campylobacter fetus subsp. venerealis
FIELD SAMPLES
LATENT CLASS MODEL
dc.title.none.fl_str_mv Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description The sensitivity (Se) and specificity (Sp) of three diagnostic tests for the detection of Campylobacter fetus venerealis (Cfv) using field samples were estimated using a Bayesian latent class model (BLCM), accounting for the absence of a gold standard. The tests included in this study were direct immunofluorescence antibody test (IFAT), polymerase chain reaction (PCR), and real-time PCR (RT-PCR). Twelve farms from two different populations were selected and bull prepuce samples were collected. The IFAT was performed according to the OIE Manual. The conventional PCR was performed as multiplex, targeting the gene nahE for C. fetus species identification and insertion element ISCfe1 for Cfv identification. The RT-PCR was performed as uniplex: one targeting the gene nahE for C. fetus and the other targeting the insertion ISCfe1 (ISC2) for Cfv. Results from the BLCM showed a median Se of 11.7% (Bayesian credibility interval (BCI): 1.93?29.79%), 53.7% (BCI: 23.1?95.0%), and 36.1% (BCI: 14.5?71.7%) for IFAT, PCR, and RT-PCR respectively. The Sp were 94.5% (BCI: 90.1?97.9%), 97.0% (BCI: 92.9?99.3%), and 98.4% (BCI: 95.3?99.7%) for IFAT, PCR, and RT-PCR respectively. The correlation between PCR and RT-PCR was positive and low in samples from both sampled population (0.63% vs 8.47%). These results suggest that diagnostic sensitivity of the studied tests is lower using field samples than using pure Cfv strains.
eu_rights_str_mv openAccess
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repository.name.fl_str_mv AINFO - Instituto Nacional de Investigación Agropecuaria
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rights_invalid_str_mv Acceso abierto
spelling 2022-10-21T01:59:50Z2022-10-21T01:59:50Z20222022-10-21T01:59:50Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=62634&biblioteca=vazio&busca=62634&qFacets=62634The sensitivity (Se) and specificity (Sp) of three diagnostic tests for the detection of Campylobacter fetus venerealis (Cfv) using field samples were estimated using a Bayesian latent class model (BLCM), accounting for the absence of a gold standard. The tests included in this study were direct immunofluorescence antibody test (IFAT), polymerase chain reaction (PCR), and real-time PCR (RT-PCR). Twelve farms from two different populations were selected and bull prepuce samples were collected. The IFAT was performed according to the OIE Manual. The conventional PCR was performed as multiplex, targeting the gene nahE for C. fetus species identification and insertion element ISCfe1 for Cfv identification. The RT-PCR was performed as uniplex: one targeting the gene nahE for C. fetus and the other targeting the insertion ISCfe1 (ISC2) for Cfv. Results from the BLCM showed a median Se of 11.7% (Bayesian credibility interval (BCI): 1.93?29.79%), 53.7% (BCI: 23.1?95.0%), and 36.1% (BCI: 14.5?71.7%) for IFAT, PCR, and RT-PCR respectively. The Sp were 94.5% (BCI: 90.1?97.9%), 97.0% (BCI: 92.9?99.3%), and 98.4% (BCI: 95.3?99.7%) for IFAT, PCR, and RT-PCR respectively. The correlation between PCR and RT-PCR was positive and low in samples from both sampled population (0.63% vs 8.47%). These results suggest that diagnostic sensitivity of the studied tests is lower using field samples than using pure Cfv strains.https://hdl.handle.net/20.500.12381/2074enenginfo:eu-repo/semantics/openAccessAcceso abiertoBEEF CATTLECAMPYLOBACTER FETUSCampylobacter fetus subsp. venerealisFIELD SAMPLESLATENT CLASS MODELPerformance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaMEDEROS, A.GALARRAGA, D.VAN DER GRAAF-VAN BLOOIS, L.BUCZINSKI, S.SWORDsword-2022-10-20T22:59:50.original.xmlOriginal SWORD entry documentapplication/octet-stream2616https://redi.anii.org.uy/jspui/bitstream/20.500.12381/2074/1/sword-2022-10-20T22%3a59%3a50.original.xmlc779bdbb89a6e61622e3b9d2ef02ccf6MD5120.500.12381/20742022-10-20 22:59:51.133oai:redi.anii.org.uy:20.500.12381/2074Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:59:51AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
MEDEROS, A.
BEEF CATTLE
CAMPYLOBACTER FETUS
Campylobacter fetus subsp. venerealis
FIELD SAMPLES
LATENT CLASS MODEL
status_str publishedVersion
title Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
title_full Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
title_fullStr Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
title_full_unstemmed Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
title_short Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
title_sort Performance of bovine genital campylobacteriosis diagnostic tests in bulls from Uruguay: a Bayesian latent class model approach.
topic BEEF CATTLE
CAMPYLOBACTER FETUS
Campylobacter fetus subsp. venerealis
FIELD SAMPLES
LATENT CLASS MODEL
url http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62634&biblioteca=vazio&busca=62634&qFacets=62634