Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.

QUEZADA, M. - AGUILAR, I. - BALMELLI, G.

Resumen:

ABSTRACT.- In forest tree breeding programs, open-pollinated families are frequently used to estimate genetic parameters and evaluate genetic merit of individuals. However, the presence of selfing events not documented in the pedigree affects the estimation of these parameters. In this study, 194 open-pollinated families of Eucalyptus globulus Labill. trees were used to compare the precision of estimated genetic parameters and accuracies of predicted breeding values with the conventional pedigree-based model (ABLUP) and the pedigree-genomic single-step model (ssGBLUP). The available genetic information for pairwise parent-offspring allows us to estimate an actual populational selfing rate of 5.4%. For all the growth and disease resistance traits evaluated, the inclusion of selfing rate was effective in reducing the upward bias, between 7 and 30%, in heritability estimates. The predictive abilities for ssGBLUP models were always higher than those for ABLUP models. In both cases, a considerable reduction of predictive abilities was observed when relatedness between training and validation populations was removed. We proposed a straightforward approach for the estimation of the actual selfing rate in a breeding population. The incorporation of this parameter allows for more reliable estimation of genetic parameters. Furthermore, our results proved that ssGBLUP was effective for the accurate estimation of genetic parameters and to improve the prediction of breeding values in presence of selfing events, thus a valuable tool for genomic evaluations in Eucalyptus breeding programs. © 2022, The Author(s).

Detalles Bibliográficos
2022
Disease resistance
Selfing rate
Single-step genomic evaluation
Genotype
Breeding Value
EUCALYPTUS
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
https://ainfo.inia.uy/consulta/busca?b=pc&id=62806&biblioteca=vazio&busca=62806&qFacets=62806
Acceso abierto
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author QUEZADA, M.
author2 AGUILAR, I.
BALMELLI, G.
author2_role author
author
author_facet QUEZADA, M.
AGUILAR, I.
BALMELLI, G.
author_role author
bitstream.checksum.fl_str_mv 8c965d06b081b83da679946f948d7c7f
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/4192/1/sword-2025-06-23T15%3a23%3a22.original.xml
collection AINFO
dc.creator.none.fl_str_mv QUEZADA, M.
AGUILAR, I.
BALMELLI, G.
dc.date.accessioned.none.fl_str_mv 2025-06-23T18:23:22Z
dc.date.available.none.fl_str_mv 2025-06-23T18:23:22Z
dc.date.issued.none.fl_str_mv 2022
dc.date.updated.none.fl_str_mv 2025-06-23T18:23:22Z
dc.description.abstract.none.fl_txt_mv ABSTRACT.- In forest tree breeding programs, open-pollinated families are frequently used to estimate genetic parameters and evaluate genetic merit of individuals. However, the presence of selfing events not documented in the pedigree affects the estimation of these parameters. In this study, 194 open-pollinated families of Eucalyptus globulus Labill. trees were used to compare the precision of estimated genetic parameters and accuracies of predicted breeding values with the conventional pedigree-based model (ABLUP) and the pedigree-genomic single-step model (ssGBLUP). The available genetic information for pairwise parent-offspring allows us to estimate an actual populational selfing rate of 5.4%. For all the growth and disease resistance traits evaluated, the inclusion of selfing rate was effective in reducing the upward bias, between 7 and 30%, in heritability estimates. The predictive abilities for ssGBLUP models were always higher than those for ABLUP models. In both cases, a considerable reduction of predictive abilities was observed when relatedness between training and validation populations was removed. We proposed a straightforward approach for the estimation of the actual selfing rate in a breeding population. The incorporation of this parameter allows for more reliable estimation of genetic parameters. Furthermore, our results proved that ssGBLUP was effective for the accurate estimation of genetic parameters and to improve the prediction of breeding values in presence of selfing events, thus a valuable tool for genomic evaluations in Eucalyptus breeding programs. © 2022, The Author(s).
dc.identifier.none.fl_str_mv https://ainfo.inia.uy/consulta/busca?b=pc&id=62806&biblioteca=vazio&busca=62806&qFacets=62806
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv Disease resistance
Selfing rate
Single-step genomic evaluation
Genotype
Breeding Value
EUCALYPTUS
dc.title.none.fl_str_mv Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description ABSTRACT.- In forest tree breeding programs, open-pollinated families are frequently used to estimate genetic parameters and evaluate genetic merit of individuals. However, the presence of selfing events not documented in the pedigree affects the estimation of these parameters. In this study, 194 open-pollinated families of Eucalyptus globulus Labill. trees were used to compare the precision of estimated genetic parameters and accuracies of predicted breeding values with the conventional pedigree-based model (ABLUP) and the pedigree-genomic single-step model (ssGBLUP). The available genetic information for pairwise parent-offspring allows us to estimate an actual populational selfing rate of 5.4%. For all the growth and disease resistance traits evaluated, the inclusion of selfing rate was effective in reducing the upward bias, between 7 and 30%, in heritability estimates. The predictive abilities for ssGBLUP models were always higher than those for ABLUP models. In both cases, a considerable reduction of predictive abilities was observed when relatedness between training and validation populations was removed. We proposed a straightforward approach for the estimation of the actual selfing rate in a breeding population. The incorporation of this parameter allows for more reliable estimation of genetic parameters. Furthermore, our results proved that ssGBLUP was effective for the accurate estimation of genetic parameters and to improve the prediction of breeding values in presence of selfing events, thus a valuable tool for genomic evaluations in Eucalyptus breeding programs. © 2022, The Author(s).
eu_rights_str_mv openAccess
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repository.name.fl_str_mv AINFO - Instituto Nacional de Investigación Agropecuaria
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spelling 2025-06-23T18:23:22Z2025-06-23T18:23:22Z20222025-06-23T18:23:22Zhttps://ainfo.inia.uy/consulta/busca?b=pc&id=62806&biblioteca=vazio&busca=62806&qFacets=62806ABSTRACT.- In forest tree breeding programs, open-pollinated families are frequently used to estimate genetic parameters and evaluate genetic merit of individuals. However, the presence of selfing events not documented in the pedigree affects the estimation of these parameters. In this study, 194 open-pollinated families of Eucalyptus globulus Labill. trees were used to compare the precision of estimated genetic parameters and accuracies of predicted breeding values with the conventional pedigree-based model (ABLUP) and the pedigree-genomic single-step model (ssGBLUP). The available genetic information for pairwise parent-offspring allows us to estimate an actual populational selfing rate of 5.4%. For all the growth and disease resistance traits evaluated, the inclusion of selfing rate was effective in reducing the upward bias, between 7 and 30%, in heritability estimates. The predictive abilities for ssGBLUP models were always higher than those for ABLUP models. In both cases, a considerable reduction of predictive abilities was observed when relatedness between training and validation populations was removed. We proposed a straightforward approach for the estimation of the actual selfing rate in a breeding population. The incorporation of this parameter allows for more reliable estimation of genetic parameters. Furthermore, our results proved that ssGBLUP was effective for the accurate estimation of genetic parameters and to improve the prediction of breeding values in presence of selfing events, thus a valuable tool for genomic evaluations in Eucalyptus breeding programs. © 2022, The Author(s).https://hdl.handle.net/20.500.12381/4192enenginfo:eu-repo/semantics/openAccessAcceso abiertoDisease resistanceSelfing rateSingle-step genomic evaluationGenotypeBreeding ValueEUCALYPTUSGenomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaQUEZADA, M.AGUILAR, I.BALMELLI, G.SWORDsword-2025-06-23T15:23:22.original.xmlOriginal SWORD entry documentapplication/octet-stream2788https://redi.anii.org.uy/jspui/bitstream/20.500.12381/4192/1/sword-2025-06-23T15%3a23%3a22.original.xml8c965d06b081b83da679946f948d7c7fMD5120.500.12381/41922026-02-10 15:53:56.042oai:redi.anii.org.uy:20.500.12381/4192Institucionalhttps://ainfo.inia.uy/Organismo científico-tecnológicohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2026-02-10T18:53:56AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
QUEZADA, M.
Disease resistance
Selfing rate
Single-step genomic evaluation
Genotype
Breeding Value
EUCALYPTUS
status_str publishedVersion
title Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
title_full Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
title_fullStr Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
title_full_unstemmed Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
title_short Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
title_sort Genomic breeding values' prediction including populational selfing rate in an open-pollinated Eucalyptus globulus breeding population.
topic Disease resistance
Selfing rate
Single-step genomic evaluation
Genotype
Breeding Value
EUCALYPTUS
url https://ainfo.inia.uy/consulta/busca?b=pc&id=62806&biblioteca=vazio&busca=62806&qFacets=62806