Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).

COUTO, D. - STRANSFELD, L. - ARRUABARRENA, A. - ZIPFEL, C. - LOZANO-DURÁN, R.

Resumen:

Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central.


Detalles Bibliográficos
2015
RNA
Arabidopsis
Tomato
Wheat
Affordable
Protocol
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208
Acceso abierto
_version_ 1805580526716715008
author COUTO, D.
author2 STRANSFELD, L.
ARRUABARRENA, A.
ZIPFEL, C.
LOZANO-DURÁN, R.
author2_role author
author
author
author
author_facet COUTO, D.
STRANSFELD, L.
ARRUABARRENA, A.
ZIPFEL, C.
LOZANO-DURÁN, R.
author_role author
bitstream.checksum.fl_str_mv a2821c4e56d4106ae4cca216d27edafe
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1017/1/sword-2022-10-20T22%3a23%3a50.original.xml
collection AINFO
dc.creator.none.fl_str_mv COUTO, D.
STRANSFELD, L.
ARRUABARRENA, A.
ZIPFEL, C.
LOZANO-DURÁN, R.
dc.date.accessioned.none.fl_str_mv 2022-10-21T01:23:50Z
dc.date.available.none.fl_str_mv 2022-10-21T01:23:50Z
dc.date.issued.none.fl_str_mv 2015
dc.date.updated.none.fl_str_mv 2022-10-21T01:23:50Z
dc.description.abstract.none.fl_txt_mv Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central.
dc.identifier.none.fl_str_mv http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv RNA
Arabidopsis
Tomato
Wheat
Affordable
Protocol
dc.title.none.fl_str_mv Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central.
eu_rights_str_mv openAccess
format article
id INIAOAI_622de022d6ea6c2d78c7c284fbbe1eb9
instacron_str Instituto Nacional de Investigación Agropecuaria
institution Instituto Nacional de Investigación Agropecuaria
instname_str Instituto Nacional de Investigación Agropecuaria
language eng
language_invalid_str_mv en
network_acronym_str INIAOAI
network_name_str AINFO
oai_identifier_str oai:redi.anii.org.uy:20.500.12381/1017
publishDate 2015
reponame_str AINFO
repository.mail.fl_str_mv lorrego@inia.org.uy
repository.name.fl_str_mv AINFO - Instituto Nacional de Investigación Agropecuaria
repository_id_str
rights_invalid_str_mv Acceso abierto
spelling 2022-10-21T01:23:50Z2022-10-21T01:23:50Z20152022-10-21T01:23:50Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central.https://hdl.handle.net/20.500.12381/1017enenginfo:eu-repo/semantics/openAccessAcceso abiertoRNAArabidopsisTomatoWheatAffordableProtocolBroad application of a simple and affordable protocol for isolating plant RNA. (Short Report).ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaCOUTO, D.STRANSFELD, L.ARRUABARRENA, A.ZIPFEL, C.LOZANO-DURÁN, R.SWORDsword-2022-10-20T22:23:50.original.xmlOriginal SWORD entry documentapplication/octet-stream2676https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1017/1/sword-2022-10-20T22%3a23%3a50.original.xmla2821c4e56d4106ae4cca216d27edafeMD5120.500.12381/10172022-10-20 22:23:50.623oai:redi.anii.org.uy:20.500.12381/1017Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:23:50AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
COUTO, D.
RNA
Arabidopsis
Tomato
Wheat
Affordable
Protocol
status_str publishedVersion
title Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
title_full Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
title_fullStr Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
title_full_unstemmed Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
title_short Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
title_sort Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
topic RNA
Arabidopsis
Tomato
Wheat
Affordable
Protocol
url http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208