Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report).
Resumen:
Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central.
2015 | |
RNA Arabidopsis Tomato Wheat Affordable Protocol |
|
Inglés | |
Instituto Nacional de Investigación Agropecuaria | |
AINFO | |
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208 | |
Acceso abierto |
_version_ | 1805580526716715008 |
---|---|
author | COUTO, D. |
author2 | STRANSFELD, L. ARRUABARRENA, A. ZIPFEL, C. LOZANO-DURÁN, R. |
author2_role | author author author author |
author_facet | COUTO, D. STRANSFELD, L. ARRUABARRENA, A. ZIPFEL, C. LOZANO-DURÁN, R. |
author_role | author |
bitstream.checksum.fl_str_mv | a2821c4e56d4106ae4cca216d27edafe |
bitstream.checksumAlgorithm.fl_str_mv | MD5 |
bitstream.url.fl_str_mv | https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1017/1/sword-2022-10-20T22%3a23%3a50.original.xml |
collection | AINFO |
dc.creator.none.fl_str_mv | COUTO, D. STRANSFELD, L. ARRUABARRENA, A. ZIPFEL, C. LOZANO-DURÁN, R. |
dc.date.accessioned.none.fl_str_mv | 2022-10-21T01:23:50Z |
dc.date.available.none.fl_str_mv | 2022-10-21T01:23:50Z |
dc.date.issued.none.fl_str_mv | 2015 |
dc.date.updated.none.fl_str_mv | 2022-10-21T01:23:50Z |
dc.description.abstract.none.fl_txt_mv | Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central. |
dc.identifier.none.fl_str_mv | http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208 |
dc.language.iso.none.fl_str_mv | en eng |
dc.rights.es.fl_str_mv | Acceso abierto |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:AINFO instname:Instituto Nacional de Investigación Agropecuaria instacron:Instituto Nacional de Investigación Agropecuaria |
dc.subject.none.fl_str_mv | RNA Arabidopsis Tomato Wheat Affordable Protocol |
dc.title.none.fl_str_mv | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
dc.type.none.fl_str_mv | Article PublishedVersion info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central. |
eu_rights_str_mv | openAccess |
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publishDate | 2015 |
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repository.name.fl_str_mv | AINFO - Instituto Nacional de Investigación Agropecuaria |
repository_id_str | |
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spelling | 2022-10-21T01:23:50Z2022-10-21T01:23:50Z20152022-10-21T01:23:50Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208Abstract View references (4)Background: Standard molecular biological methods involve the analysis of gene expression in living organisms under diverse environmental and developmental conditions. One of the most direct approaches to quantify gene expression is the isolation of RNA. Most techniques used to quantify gene expression require the isolation of RNA, usually from a large number of samples. While most published protocols, including those for commercial reagents, are either labour intensive, use hazardous chemicals and/or are costly, a previously published protocol for RNA isolation in Arabidopsis thaliana yields high amounts of good quality RNA in a simple, safe and inexpensive manner. Findings: We have tested this protocol in tomato and wheat leaves, as well as in Arabidopsis leaves, and compared the resulting RNA to that obtained using a commercial phenol-based reagent. Our results demonstrate that this protocol is applicable to other plant species, including monocots, and offers yield and purity at least comparable to those provided by commercial phenol-based reagents. Conclusions: Here, we show that this previously published RNA isolation protocol can be easily extended to other plant species without further modification. Due to its simplicity and the use of inexpensive reagents, this protocol is accessible and affordable and can be easily implemented to work on different plant species in laboratories worldwide. © 2015 Couto et al.; licensee BioMed Central.https://hdl.handle.net/20.500.12381/1017enenginfo:eu-repo/semantics/openAccessAcceso abiertoRNAArabidopsisTomatoWheatAffordableProtocolBroad application of a simple and affordable protocol for isolating plant RNA. (Short Report).ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaCOUTO, D.STRANSFELD, L.ARRUABARRENA, A.ZIPFEL, C.LOZANO-DURÁN, R.SWORDsword-2022-10-20T22:23:50.original.xmlOriginal SWORD entry documentapplication/octet-stream2676https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1017/1/sword-2022-10-20T22%3a23%3a50.original.xmla2821c4e56d4106ae4cca216d27edafeMD5120.500.12381/10172022-10-20 22:23:50.623oai:redi.anii.org.uy:20.500.12381/1017Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:23:50AINFO - Instituto Nacional de Investigación Agropecuariafalse |
spellingShingle | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). COUTO, D. RNA Arabidopsis Tomato Wheat Affordable Protocol |
status_str | publishedVersion |
title | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
title_full | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
title_fullStr | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
title_full_unstemmed | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
title_short | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
title_sort | Broad application of a simple and affordable protocol for isolating plant RNA. (Short Report). |
topic | RNA Arabidopsis Tomato Wheat Affordable Protocol |
url | http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60208&biblioteca=vazio&busca=60208&qFacets=60208 |