Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.

VERA, B. - NAVAJAS, E. - VAN LIER, E. - CARRACELAS, B. - PERAZA, P. - CIAPPESONI, G.

Resumen:

ABSTRACT.- Infection by gastrointestinal nematodes (GINs) in sheep is a significant health issue that affects animal welfare and leads to economic losses in the production sector. Genetic selection for parasite resistance has shown promise in improving animal health and productivity. This study aimed to determine if incorporating genomic data into genetic prediction models currently used in Uruguay could improve the accuracy of breeding value estimations for GIN resistance in the Australian Merino breed. This study compared the accuracy of breeding value predictions using the BLUP (Best Linear Unbiased Prediction) and ssGBLUP (single-step genomic BLUP) models on partial and complete data sets, including 32,713 phenotyped and 3238 genotyped animals. The quality of predictions was evaluated using a linear regression method, focusing on 145 rams. The inclusion of genomic data increased the average individual accuracies by 4% for genotyped and phenotyped animals. For animals with genomic and non-phenotyped data, the accuracy improvement reached 8%. Of these, one group of animals that benefited from an ssGBLUP evaluation came from a facility with a strong connection to the informative nucleus and showed an average increase of 20% in their individual accuracy. Additionally, ssGBLUP slightly outperformed BLUP in terms of prediction quality. These findings demonstrate the potential of genomic information to improve the accuracy of breeding value predictions for parasite resistance in sheep. The integration of genomic data, particularly in non-phenotyped animals, offers a promising tool for enhancing genetic selection in Australian Merino sheep to improve resistance to gastrointestinal parasites. © 2025 by the authors. Licensee MDPI, Basel, Switzerland.

Detalles Bibliográficos
2025
Ovis aries
FEC
Haemonchus contortus
SISTEMA GANADERO EXTENSIVO - INIA
OVINOS
MERINO AUSTRALIANO
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
https://ainfo.inia.uy/consulta/busca?b=pc&id=65037&biblioteca=vazio&busca=65037&qFacets=65037
Acceso abierto
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author VERA, B.
author2 NAVAJAS, E.
VAN LIER, E.
CARRACELAS, B.
PERAZA, P.
CIAPPESONI, G.
author2_role author
author
author
author
author
author_facet VERA, B.
NAVAJAS, E.
VAN LIER, E.
CARRACELAS, B.
PERAZA, P.
CIAPPESONI, G.
author_role author
bitstream.checksum.fl_str_mv 373492fcb5b966cb83bb5d955e4bceae
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/4986/1/sword-2025-06-23T15%3a47%3a00.original.xml
collection AINFO
dc.creator.none.fl_str_mv VERA, B.
NAVAJAS, E.
VAN LIER, E.
CARRACELAS, B.
PERAZA, P.
CIAPPESONI, G.
dc.date.accessioned.none.fl_str_mv 2025-06-23T18:47:00Z
dc.date.available.none.fl_str_mv 2025-06-23T18:47:00Z
dc.date.issued.none.fl_str_mv 2025
dc.date.updated.none.fl_str_mv 2025-06-23T18:47:00Z
dc.description.abstract.none.fl_txt_mv ABSTRACT.- Infection by gastrointestinal nematodes (GINs) in sheep is a significant health issue that affects animal welfare and leads to economic losses in the production sector. Genetic selection for parasite resistance has shown promise in improving animal health and productivity. This study aimed to determine if incorporating genomic data into genetic prediction models currently used in Uruguay could improve the accuracy of breeding value estimations for GIN resistance in the Australian Merino breed. This study compared the accuracy of breeding value predictions using the BLUP (Best Linear Unbiased Prediction) and ssGBLUP (single-step genomic BLUP) models on partial and complete data sets, including 32,713 phenotyped and 3238 genotyped animals. The quality of predictions was evaluated using a linear regression method, focusing on 145 rams. The inclusion of genomic data increased the average individual accuracies by 4% for genotyped and phenotyped animals. For animals with genomic and non-phenotyped data, the accuracy improvement reached 8%. Of these, one group of animals that benefited from an ssGBLUP evaluation came from a facility with a strong connection to the informative nucleus and showed an average increase of 20% in their individual accuracy. Additionally, ssGBLUP slightly outperformed BLUP in terms of prediction quality. These findings demonstrate the potential of genomic information to improve the accuracy of breeding value predictions for parasite resistance in sheep. The integration of genomic data, particularly in non-phenotyped animals, offers a promising tool for enhancing genetic selection in Australian Merino sheep to improve resistance to gastrointestinal parasites. © 2025 by the authors. Licensee MDPI, Basel, Switzerland.
dc.identifier.none.fl_str_mv https://ainfo.inia.uy/consulta/busca?b=pc&id=65037&biblioteca=vazio&busca=65037&qFacets=65037
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv Ovis aries
FEC
Haemonchus contortus
SISTEMA GANADERO EXTENSIVO - INIA
OVINOS
MERINO AUSTRALIANO
dc.title.none.fl_str_mv Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description ABSTRACT.- Infection by gastrointestinal nematodes (GINs) in sheep is a significant health issue that affects animal welfare and leads to economic losses in the production sector. Genetic selection for parasite resistance has shown promise in improving animal health and productivity. This study aimed to determine if incorporating genomic data into genetic prediction models currently used in Uruguay could improve the accuracy of breeding value estimations for GIN resistance in the Australian Merino breed. This study compared the accuracy of breeding value predictions using the BLUP (Best Linear Unbiased Prediction) and ssGBLUP (single-step genomic BLUP) models on partial and complete data sets, including 32,713 phenotyped and 3238 genotyped animals. The quality of predictions was evaluated using a linear regression method, focusing on 145 rams. The inclusion of genomic data increased the average individual accuracies by 4% for genotyped and phenotyped animals. For animals with genomic and non-phenotyped data, the accuracy improvement reached 8%. Of these, one group of animals that benefited from an ssGBLUP evaluation came from a facility with a strong connection to the informative nucleus and showed an average increase of 20% in their individual accuracy. Additionally, ssGBLUP slightly outperformed BLUP in terms of prediction quality. These findings demonstrate the potential of genomic information to improve the accuracy of breeding value predictions for parasite resistance in sheep. The integration of genomic data, particularly in non-phenotyped animals, offers a promising tool for enhancing genetic selection in Australian Merino sheep to improve resistance to gastrointestinal parasites. © 2025 by the authors. Licensee MDPI, Basel, Switzerland.
eu_rights_str_mv openAccess
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spelling 2025-06-23T18:47:00Z2025-06-23T18:47:00Z20252025-06-23T18:47:00Zhttps://ainfo.inia.uy/consulta/busca?b=pc&id=65037&biblioteca=vazio&busca=65037&qFacets=65037ABSTRACT.- Infection by gastrointestinal nematodes (GINs) in sheep is a significant health issue that affects animal welfare and leads to economic losses in the production sector. Genetic selection for parasite resistance has shown promise in improving animal health and productivity. This study aimed to determine if incorporating genomic data into genetic prediction models currently used in Uruguay could improve the accuracy of breeding value estimations for GIN resistance in the Australian Merino breed. This study compared the accuracy of breeding value predictions using the BLUP (Best Linear Unbiased Prediction) and ssGBLUP (single-step genomic BLUP) models on partial and complete data sets, including 32,713 phenotyped and 3238 genotyped animals. The quality of predictions was evaluated using a linear regression method, focusing on 145 rams. The inclusion of genomic data increased the average individual accuracies by 4% for genotyped and phenotyped animals. For animals with genomic and non-phenotyped data, the accuracy improvement reached 8%. Of these, one group of animals that benefited from an ssGBLUP evaluation came from a facility with a strong connection to the informative nucleus and showed an average increase of 20% in their individual accuracy. Additionally, ssGBLUP slightly outperformed BLUP in terms of prediction quality. These findings demonstrate the potential of genomic information to improve the accuracy of breeding value predictions for parasite resistance in sheep. The integration of genomic data, particularly in non-phenotyped animals, offers a promising tool for enhancing genetic selection in Australian Merino sheep to improve resistance to gastrointestinal parasites. © 2025 by the authors. Licensee MDPI, Basel, Switzerland.https://hdl.handle.net/20.500.12381/4986enenginfo:eu-repo/semantics/openAccessAcceso abiertoOvis ariesFECHaemonchus contortusSISTEMA GANADERO EXTENSIVO - INIAOVINOSMERINO AUSTRALIANOAccuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaVERA, B.NAVAJAS, E.VAN LIER, E.CARRACELAS, B.PERAZA, P.CIAPPESONI, G.SWORDsword-2025-06-23T15:47:00.original.xmlOriginal SWORD entry documentapplication/octet-stream3055https://redi.anii.org.uy/jspui/bitstream/20.500.12381/4986/1/sword-2025-06-23T15%3a47%3a00.original.xml373492fcb5b966cb83bb5d955e4bceaeMD5120.500.12381/49862026-02-10 15:54:03.53oai:redi.anii.org.uy:20.500.12381/4986Institucionalhttps://ainfo.inia.uy/Organismo científico-tecnológicohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2026-02-10T18:54:03AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
VERA, B.
Ovis aries
FEC
Haemonchus contortus
SISTEMA GANADERO EXTENSIVO - INIA
OVINOS
MERINO AUSTRALIANO
status_str publishedVersion
title Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
title_full Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
title_fullStr Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
title_full_unstemmed Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
title_short Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
title_sort Accuracy of genomic predictions for resistance to gastrointestinal parasites in Australian Merino sheep.
topic Ovis aries
FEC
Haemonchus contortus
SISTEMA GANADERO EXTENSIVO - INIA
OVINOS
MERINO AUSTRALIANO
url https://ainfo.inia.uy/consulta/busca?b=pc&id=65037&biblioteca=vazio&busca=65037&qFacets=65037