Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.

CARDOSO, F. F. - SOLLERO, B. P. - COMIN, H. B. - GOMES, C. G. - ROSO, V. M. - HIGA, R. H. - CAETANO, A. R. - YOKOO, M. J. - AGUILAR, I.

Resumen:

ABSTRACT.This work aimed to determine the accuracy and bias of genomic predictions of Braford (BO) and Hereford (HH) cattle genetic resistance to ticks. Repeated 10,673 tick counts were obtained from 3,435 BO and 928 HH cattle from Delta G Connection breeding program. A subset of 2,803 BO and 652 HH samples were genotyped and 41,045 markers remained after quality control. Log transformed records were adjusted by a pedigree repeatability model to estimate breeding values (EBV), subsequently used to obtained deregressed EBV. Data were split into five subsets for cross-validation using k-means and random clustering. Genomic predictions with moderate accuracies (0.38 to 0.60) were obtained by best unbiased linear prediction (GBLUP), BayesB and single step GBLUP indicating that, despite some bias, genomic selection could be used as practical tool to improve cattle genetic resistance to ticks.


Detalles Bibliográficos
2014
Beef cattle
Genomic selection
Health
Tick resistance
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=61926&biblioteca=vazio&busca=61926&qFacets=61926
Acceso abierto
_version_ 1805580532188184576
author CARDOSO, F. F.
author2 SOLLERO, B. P.
COMIN, H. B.
GOMES, C. G.
ROSO, V. M.
HIGA, R. H.
CAETANO, A. R.
YOKOO, M. J.
AGUILAR, I.
author2_role author
author
author
author
author
author
author
author
author_facet CARDOSO, F. F.
SOLLERO, B. P.
COMIN, H. B.
GOMES, C. G.
ROSO, V. M.
HIGA, R. H.
CAETANO, A. R.
YOKOO, M. J.
AGUILAR, I.
author_role author
bitstream.checksum.fl_str_mv f57b5b34c37700ffc2255ccdf633c94e
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1735/1/sword-2022-10-20T22%3a49%3a06.original.xml
collection AINFO
dc.creator.none.fl_str_mv CARDOSO, F. F.
SOLLERO, B. P.
COMIN, H. B.
GOMES, C. G.
ROSO, V. M.
HIGA, R. H.
CAETANO, A. R.
YOKOO, M. J.
AGUILAR, I.
dc.date.accessioned.none.fl_str_mv 2022-10-21T01:49:06Z
dc.date.available.none.fl_str_mv 2022-10-21T01:49:06Z
dc.date.issued.none.fl_str_mv 2014
dc.date.updated.none.fl_str_mv 2022-10-21T01:49:06Z
dc.description.abstract.none.fl_txt_mv ABSTRACT.This work aimed to determine the accuracy and bias of genomic predictions of Braford (BO) and Hereford (HH) cattle genetic resistance to ticks. Repeated 10,673 tick counts were obtained from 3,435 BO and 928 HH cattle from Delta G Connection breeding program. A subset of 2,803 BO and 652 HH samples were genotyped and 41,045 markers remained after quality control. Log transformed records were adjusted by a pedigree repeatability model to estimate breeding values (EBV), subsequently used to obtained deregressed EBV. Data were split into five subsets for cross-validation using k-means and random clustering. Genomic predictions with moderate accuracies (0.38 to 0.60) were obtained by best unbiased linear prediction (GBLUP), BayesB and single step GBLUP indicating that, despite some bias, genomic selection could be used as practical tool to improve cattle genetic resistance to ticks.
dc.identifier.none.fl_str_mv http://www.ainfo.inia.uy/consulta/busca?b=pc&id=61926&biblioteca=vazio&busca=61926&qFacets=61926
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv Beef cattle
Genomic selection
Health
Tick resistance
dc.title.none.fl_str_mv Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
dc.type.none.fl_str_mv ConferenceObject
PublishedVersion
info:eu-repo/semantics/conferenceObject
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description ABSTRACT.This work aimed to determine the accuracy and bias of genomic predictions of Braford (BO) and Hereford (HH) cattle genetic resistance to ticks. Repeated 10,673 tick counts were obtained from 3,435 BO and 928 HH cattle from Delta G Connection breeding program. A subset of 2,803 BO and 652 HH samples were genotyped and 41,045 markers remained after quality control. Log transformed records were adjusted by a pedigree repeatability model to estimate breeding values (EBV), subsequently used to obtained deregressed EBV. Data were split into five subsets for cross-validation using k-means and random clustering. Genomic predictions with moderate accuracies (0.38 to 0.60) were obtained by best unbiased linear prediction (GBLUP), BayesB and single step GBLUP indicating that, despite some bias, genomic selection could be used as practical tool to improve cattle genetic resistance to ticks.
eu_rights_str_mv openAccess
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publishDate 2014
reponame_str AINFO
repository.mail.fl_str_mv lorrego@inia.org.uy
repository.name.fl_str_mv AINFO - Instituto Nacional de Investigación Agropecuaria
repository_id_str
rights_invalid_str_mv Acceso abierto
spelling 2022-10-21T01:49:06Z2022-10-21T01:49:06Z20142022-10-21T01:49:06Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=61926&biblioteca=vazio&busca=61926&qFacets=61926ABSTRACT.This work aimed to determine the accuracy and bias of genomic predictions of Braford (BO) and Hereford (HH) cattle genetic resistance to ticks. Repeated 10,673 tick counts were obtained from 3,435 BO and 928 HH cattle from Delta G Connection breeding program. A subset of 2,803 BO and 652 HH samples were genotyped and 41,045 markers remained after quality control. Log transformed records were adjusted by a pedigree repeatability model to estimate breeding values (EBV), subsequently used to obtained deregressed EBV. Data were split into five subsets for cross-validation using k-means and random clustering. Genomic predictions with moderate accuracies (0.38 to 0.60) were obtained by best unbiased linear prediction (GBLUP), BayesB and single step GBLUP indicating that, despite some bias, genomic selection could be used as practical tool to improve cattle genetic resistance to ticks.https://hdl.handle.net/20.500.12381/1735enenginfo:eu-repo/semantics/openAccessAcceso abiertoBeef cattleGenomic selectionHealthTick resistanceAccuracy of genomic prediction for tick resistance in Braford and Hereford cattle.ConferenceObjectPublishedVersioninfo:eu-repo/semantics/conferenceObjectinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaCARDOSO, F. F.SOLLERO, B. P.COMIN, H. B.GOMES, C. G.ROSO, V. M.HIGA, R. H.CAETANO, A. R.YOKOO, M. J.AGUILAR, I.SWORDsword-2022-10-20T22:49:06.original.xmlOriginal SWORD entry documentapplication/octet-stream2206https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1735/1/sword-2022-10-20T22%3a49%3a06.original.xmlf57b5b34c37700ffc2255ccdf633c94eMD5120.500.12381/17352022-10-20 22:49:07.313oai:redi.anii.org.uy:20.500.12381/1735Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:49:07AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
CARDOSO, F. F.
Beef cattle
Genomic selection
Health
Tick resistance
status_str publishedVersion
title Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
title_full Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
title_fullStr Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
title_full_unstemmed Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
title_short Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
title_sort Accuracy of genomic prediction for tick resistance in Braford and Hereford cattle.
topic Beef cattle
Genomic selection
Health
Tick resistance
url http://www.ainfo.inia.uy/consulta/busca?b=pc&id=61926&biblioteca=vazio&busca=61926&qFacets=61926