Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models.
Resumen:
ABSTRACT.- Random-regression models (RRM) are used in national genetic evaluations for longitudinal traits. The outputs of RRM are an index based on random-regression coefficients and its reliability. The reliabilities are obtained from the inverse of the coefficient matrix of mixed model equations (MME). The reliabilities must be approximated for large datasets because it is impossible to invert the MME. There is no extensive literature on methods to approximate the reliabilities of RRM when genomic information is included by single-step GBLUP. We developed an algorithm to approximate such reliabilities. Our method combines the reliability of the index without genomic information with the reliability of a GBLUP model in terms of effective record contributions. We tested our algorithm in the 3-lactation model for milk yield from the Czech Republic. The data had 30 million test-day records, 2.5 million animals in the pedigree, and 54,000 genotyped animals. The correlation between our approximation and the reliabilities obtained from the inversion of the MME was 0.98, and the slope and intercept of the regression were 0.91 and 0.02, respectively. The elapsed time to approximate the reliabilities for the Czech data was 21 min. © 2024, The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®.
| 2024 | |
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Random-regression models (RRM) Mixed model equations (MME) GBLUP model SISTEMA LECHERO - INIA |
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| Inglés | |
| Instituto Nacional de Investigación Agropecuaria | |
| AINFO | |
| https://ainfo.inia.uy/consulta/busca?b=pc&id=64974&biblioteca=vazio&busca=64974&qFacets=64974 | |
| Acceso abierto |
| _version_ | 1856772321106198528 |
|---|---|
| author | BERMANN, M. |
| author2 | AGUILAR, I. ALVAREZ MUNERA, A. BAUER, J. SPLÍCHAL, J. LOURENCO, D. MISZTAL, I. |
| author2_role | author author author author author author |
| author_facet | BERMANN, M. AGUILAR, I. ALVAREZ MUNERA, A. BAUER, J. SPLÍCHAL, J. LOURENCO, D. MISZTAL, I. |
| author_role | author |
| bitstream.checksum.fl_str_mv | 5b22776f6a6ebb37826ead74425551f0 |
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| bitstream.url.fl_str_mv | https://redi.anii.org.uy/jspui/bitstream/20.500.12381/4953/1/sword-2025-06-23T15%3a46%3a03.original.xml |
| collection | AINFO |
| dc.creator.none.fl_str_mv | BERMANN, M. AGUILAR, I. ALVAREZ MUNERA, A. BAUER, J. SPLÍCHAL, J. LOURENCO, D. MISZTAL, I. |
| dc.date.accessioned.none.fl_str_mv | 2025-06-23T18:46:03Z |
| dc.date.available.none.fl_str_mv | 2025-06-23T18:46:03Z |
| dc.date.issued.none.fl_str_mv | 2024 |
| dc.date.updated.none.fl_str_mv | 2025-06-23T18:46:02Z |
| dc.description.abstract.none.fl_txt_mv | ABSTRACT.- Random-regression models (RRM) are used in national genetic evaluations for longitudinal traits. The outputs of RRM are an index based on random-regression coefficients and its reliability. The reliabilities are obtained from the inverse of the coefficient matrix of mixed model equations (MME). The reliabilities must be approximated for large datasets because it is impossible to invert the MME. There is no extensive literature on methods to approximate the reliabilities of RRM when genomic information is included by single-step GBLUP. We developed an algorithm to approximate such reliabilities. Our method combines the reliability of the index without genomic information with the reliability of a GBLUP model in terms of effective record contributions. We tested our algorithm in the 3-lactation model for milk yield from the Czech Republic. The data had 30 million test-day records, 2.5 million animals in the pedigree, and 54,000 genotyped animals. The correlation between our approximation and the reliabilities obtained from the inversion of the MME was 0.98, and the slope and intercept of the regression were 0.91 and 0.02, respectively. The elapsed time to approximate the reliabilities for the Czech data was 21 min. © 2024, The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. |
| dc.identifier.none.fl_str_mv | https://ainfo.inia.uy/consulta/busca?b=pc&id=64974&biblioteca=vazio&busca=64974&qFacets=64974 |
| dc.language.iso.none.fl_str_mv | en eng |
| dc.rights.es.fl_str_mv | Acceso abierto |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:AINFO instname:Instituto Nacional de Investigación Agropecuaria instacron:Instituto Nacional de Investigación Agropecuaria |
| dc.subject.none.fl_str_mv | Random-regression models (RRM) Mixed model equations (MME) GBLUP model SISTEMA LECHERO - INIA |
| dc.title.none.fl_str_mv | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| dc.type.none.fl_str_mv | Article PublishedVersion info:eu-repo/semantics/article |
| dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
| description | ABSTRACT.- Random-regression models (RRM) are used in national genetic evaluations for longitudinal traits. The outputs of RRM are an index based on random-regression coefficients and its reliability. The reliabilities are obtained from the inverse of the coefficient matrix of mixed model equations (MME). The reliabilities must be approximated for large datasets because it is impossible to invert the MME. There is no extensive literature on methods to approximate the reliabilities of RRM when genomic information is included by single-step GBLUP. We developed an algorithm to approximate such reliabilities. Our method combines the reliability of the index without genomic information with the reliability of a GBLUP model in terms of effective record contributions. We tested our algorithm in the 3-lactation model for milk yield from the Czech Republic. The data had 30 million test-day records, 2.5 million animals in the pedigree, and 54,000 genotyped animals. The correlation between our approximation and the reliabilities obtained from the inversion of the MME was 0.98, and the slope and intercept of the regression were 0.91 and 0.02, respectively. The elapsed time to approximate the reliabilities for the Czech data was 21 min. © 2024, The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. |
| eu_rights_str_mv | openAccess |
| format | article |
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| instacron_str | Instituto Nacional de Investigación Agropecuaria |
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| publishDate | 2024 |
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| repository.name.fl_str_mv | AINFO - Instituto Nacional de Investigación Agropecuaria |
| repository_id_str | |
| rights_invalid_str_mv | Acceso abierto |
| spelling | 2025-06-23T18:46:03Z2025-06-23T18:46:03Z20242025-06-23T18:46:02Zhttps://ainfo.inia.uy/consulta/busca?b=pc&id=64974&biblioteca=vazio&busca=64974&qFacets=64974ABSTRACT.- Random-regression models (RRM) are used in national genetic evaluations for longitudinal traits. The outputs of RRM are an index based on random-regression coefficients and its reliability. The reliabilities are obtained from the inverse of the coefficient matrix of mixed model equations (MME). The reliabilities must be approximated for large datasets because it is impossible to invert the MME. There is no extensive literature on methods to approximate the reliabilities of RRM when genomic information is included by single-step GBLUP. We developed an algorithm to approximate such reliabilities. Our method combines the reliability of the index without genomic information with the reliability of a GBLUP model in terms of effective record contributions. We tested our algorithm in the 3-lactation model for milk yield from the Czech Republic. The data had 30 million test-day records, 2.5 million animals in the pedigree, and 54,000 genotyped animals. The correlation between our approximation and the reliabilities obtained from the inversion of the MME was 0.98, and the slope and intercept of the regression were 0.91 and 0.02, respectively. The elapsed time to approximate the reliabilities for the Czech data was 21 min. © 2024, The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®.https://hdl.handle.net/20.500.12381/4953enenginfo:eu-repo/semantics/openAccessAcceso abiertoRandom-regression models (RRM)Mixed model equations (MME)GBLUP modelSISTEMA LECHERO - INIAApproximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models.ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaBERMANN, M.AGUILAR, I.ALVAREZ MUNERA, A.BAUER, J.SPLÍCHAL, J.LOURENCO, D.MISZTAL, I.SWORDsword-2025-06-23T15:46:03.original.xmlOriginal SWORD entry documentapplication/octet-stream2612https://redi.anii.org.uy/jspui/bitstream/20.500.12381/4953/1/sword-2025-06-23T15%3a46%3a03.original.xml5b22776f6a6ebb37826ead74425551f0MD5120.500.12381/49532026-02-10 15:54:03.276oai:redi.anii.org.uy:20.500.12381/4953Institucionalhttps://ainfo.inia.uy/Organismo científico-tecnológicohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2026-02-10T18:54:03AINFO - Instituto Nacional de Investigación Agropecuariafalse |
| spellingShingle | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. BERMANN, M. Random-regression models (RRM) Mixed model equations (MME) GBLUP model SISTEMA LECHERO - INIA |
| status_str | publishedVersion |
| title | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| title_full | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| title_fullStr | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| title_full_unstemmed | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| title_short | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| title_sort | Approximation of reliabilities for random-regression single-step genomic best linear unbiased predictor models. |
| topic | Random-regression models (RRM) Mixed model equations (MME) GBLUP model SISTEMA LECHERO - INIA |
| url | https://ainfo.inia.uy/consulta/busca?b=pc&id=64974&biblioteca=vazio&busca=64974&qFacets=64974 |