Analysis of genetic diversity in the Oryza officinalis complex. [Research article].

FEDERICI, M. - SCHCHERBAN, A. - CAPDEVIELLE, F. - FRANCIS, M. - VAUGHAN, D.

Resumen:

ABSTRACT.The genetic relationships among 34 accessions of wild rice from Asia, Africa, America and Australia were analysed using RFLP technique. After southern blotting, DNA digestion pattern was hybridised with a highly repetitive DNA sequence of a retrotransposon from a gypsy family of mobile elements. A dendrogram was constructed from RFLP data in which the species clustered according to their genome designation (CC, BB, BBCC and CCDD genomes). Some species did not appear in the same group, for example, O. eichingeri from Africa and Sri Lanka clustered separately from each other. The same situation was observed for the accessions from China of O. officinalis, which cluster together showing a close relationship with O. rhizomatis, and O. eichingeri (both of CC genome). Also, the tetraploid BBCC from India of O. officinalis appears in the same cluster of O. eichingeri and O. punctata (both from Africa) suggesting close phylogenetic relationship with the African genomes BB, CC and BBCC.


Detalles Bibliográficos
2002
DENDOGRAM
GENETIC DIVERSITY
ORYZA OFFICINALIS COMPLEX
RFLP's
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60200&biblioteca=vazio&busca=60200&qFacets=60200
Acceso abierto
_version_ 1805580524744343552
author FEDERICI, M.
author2 SCHCHERBAN, A.
CAPDEVIELLE, F.
FRANCIS, M.
VAUGHAN, D.
author2_role author
author
author
author
author_facet FEDERICI, M.
SCHCHERBAN, A.
CAPDEVIELLE, F.
FRANCIS, M.
VAUGHAN, D.
author_role author
bitstream.checksum.fl_str_mv ac4cf6d3bc4d3dc49f5e46aa5b8a259f
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1013/1/sword-2022-10-20T22%3a23%3a40.original.xml
collection AINFO
dc.creator.none.fl_str_mv FEDERICI, M.
SCHCHERBAN, A.
CAPDEVIELLE, F.
FRANCIS, M.
VAUGHAN, D.
dc.date.accessioned.none.fl_str_mv 2022-10-21T01:23:40Z
dc.date.available.none.fl_str_mv 2022-10-21T01:23:40Z
dc.date.issued.none.fl_str_mv 2002
dc.date.updated.none.fl_str_mv 2022-10-21T01:23:40Z
dc.description.abstract.none.fl_txt_mv ABSTRACT.The genetic relationships among 34 accessions of wild rice from Asia, Africa, America and Australia were analysed using RFLP technique. After southern blotting, DNA digestion pattern was hybridised with a highly repetitive DNA sequence of a retrotransposon from a gypsy family of mobile elements. A dendrogram was constructed from RFLP data in which the species clustered according to their genome designation (CC, BB, BBCC and CCDD genomes). Some species did not appear in the same group, for example, O. eichingeri from Africa and Sri Lanka clustered separately from each other. The same situation was observed for the accessions from China of O. officinalis, which cluster together showing a close relationship with O. rhizomatis, and O. eichingeri (both of CC genome). Also, the tetraploid BBCC from India of O. officinalis appears in the same cluster of O. eichingeri and O. punctata (both from Africa) suggesting close phylogenetic relationship with the African genomes BB, CC and BBCC.
dc.identifier.none.fl_str_mv http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60200&biblioteca=vazio&busca=60200&qFacets=60200
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv DENDOGRAM
GENETIC DIVERSITY
ORYZA OFFICINALIS COMPLEX
RFLP's
dc.title.none.fl_str_mv Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description ABSTRACT.The genetic relationships among 34 accessions of wild rice from Asia, Africa, America and Australia were analysed using RFLP technique. After southern blotting, DNA digestion pattern was hybridised with a highly repetitive DNA sequence of a retrotransposon from a gypsy family of mobile elements. A dendrogram was constructed from RFLP data in which the species clustered according to their genome designation (CC, BB, BBCC and CCDD genomes). Some species did not appear in the same group, for example, O. eichingeri from Africa and Sri Lanka clustered separately from each other. The same situation was observed for the accessions from China of O. officinalis, which cluster together showing a close relationship with O. rhizomatis, and O. eichingeri (both of CC genome). Also, the tetraploid BBCC from India of O. officinalis appears in the same cluster of O. eichingeri and O. punctata (both from Africa) suggesting close phylogenetic relationship with the African genomes BB, CC and BBCC.
eu_rights_str_mv openAccess
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instacron_str Instituto Nacional de Investigación Agropecuaria
institution Instituto Nacional de Investigación Agropecuaria
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language eng
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publishDate 2002
reponame_str AINFO
repository.mail.fl_str_mv lorrego@inia.org.uy
repository.name.fl_str_mv AINFO - Instituto Nacional de Investigación Agropecuaria
repository_id_str
rights_invalid_str_mv Acceso abierto
spelling 2022-10-21T01:23:40Z2022-10-21T01:23:40Z20022022-10-21T01:23:40Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=60200&biblioteca=vazio&busca=60200&qFacets=60200ABSTRACT.The genetic relationships among 34 accessions of wild rice from Asia, Africa, America and Australia were analysed using RFLP technique. After southern blotting, DNA digestion pattern was hybridised with a highly repetitive DNA sequence of a retrotransposon from a gypsy family of mobile elements. A dendrogram was constructed from RFLP data in which the species clustered according to their genome designation (CC, BB, BBCC and CCDD genomes). Some species did not appear in the same group, for example, O. eichingeri from Africa and Sri Lanka clustered separately from each other. The same situation was observed for the accessions from China of O. officinalis, which cluster together showing a close relationship with O. rhizomatis, and O. eichingeri (both of CC genome). Also, the tetraploid BBCC from India of O. officinalis appears in the same cluster of O. eichingeri and O. punctata (both from Africa) suggesting close phylogenetic relationship with the African genomes BB, CC and BBCC.https://hdl.handle.net/20.500.12381/1013enenginfo:eu-repo/semantics/openAccessAcceso abiertoDENDOGRAMGENETIC DIVERSITYORYZA OFFICINALIS COMPLEXRFLP'sAnalysis of genetic diversity in the Oryza officinalis complex. [Research article].ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaFEDERICI, M.SCHCHERBAN, A.CAPDEVIELLE, F.FRANCIS, M.VAUGHAN, D.SWORDsword-2022-10-20T22:23:40.original.xmlOriginal SWORD entry documentapplication/octet-stream2107https://redi.anii.org.uy/jspui/bitstream/20.500.12381/1013/1/sword-2022-10-20T22%3a23%3a40.original.xmlac4cf6d3bc4d3dc49f5e46aa5b8a259fMD5120.500.12381/10132022-10-20 22:23:41.402oai:redi.anii.org.uy:20.500.12381/1013Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:23:41AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
FEDERICI, M.
DENDOGRAM
GENETIC DIVERSITY
ORYZA OFFICINALIS COMPLEX
RFLP's
status_str publishedVersion
title Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
title_full Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
title_fullStr Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
title_full_unstemmed Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
title_short Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
title_sort Analysis of genetic diversity in the Oryza officinalis complex. [Research article].
topic DENDOGRAM
GENETIC DIVERSITY
ORYZA OFFICINALIS COMPLEX
RFLP's
url http://www.ainfo.inia.uy/consulta/busca?b=pc&id=60200&biblioteca=vazio&busca=60200&qFacets=60200