Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).

CROPANO, C. - MANZANARES, CH. - YATES, S. - COPETTI, D. - DO CANTO, J. - LÜBBERSTEDT, T. - KOCH, M. - STUDER, B.

Resumen:

Abstract: Self-incompatibility (SI) is a genetic mechanism preventing self-pollination in ?40% of plant species. Two multiallelic loci, called S and Z, control the gametophytic SI system of the grass family (Poaceae), which contains all major forage grasses. Loci independentfrom S and Z have been reported to disrupt SI and lead to self-compatibility (SC). A locus causing SC in perennial ryegrass (Lolium perenne L.) was previously mapped on linkage group (LG) 5 in an F2 population segregating for SC. Using a subset of the same population (n = 68), we first performed low-resolution quantitative trait locus (QTL) mapping to exclude the presence of additional, previously undetected contributors to SC. The previously reported QTL on LG 5 explained 38.4% of the phenotypic variation, and no significant contribution from other genomic regions was found. This was verified by the presence of significantly distorted markers in the region overlapping with the QTL. Second, we fine mapped the QTL to 0.26 centimorgan (cM) using additional 2,056 plants and 23 novel sequence-based markers. Using Italian ryegrass (Lolium multiflorum Lam.) genome assembly as a reference, the markers flanking SC were estimated to span a ?3 Mb region encoding for 57 predicted genes. Among these, seven genes were proposed as relevant candidate genes based on their annotation and function described in previous studies. Our study is a step forward to identify SC genes in forage grasses and provides diagnostic markers for marker-assisted introgression of SC into elite germplasm.


Detalles Bibliográficos
2021
Self-incompatibility (SI)
Perennial ryegrass (Lolium perenne L.)
Self-compatibility (SC)
Segregation distortion
Fine mapping
candidate genes
RAIGRAS PERENNE
Inglés
Instituto Nacional de Investigación Agropecuaria
AINFO
http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62506&biblioteca=vazio&busca=62506&qFacets=62506
Acceso abierto
_version_ 1805580526610808832
author CROPANO, C.
author2 MANZANARES, CH.
YATES, S.
COPETTI, D.
DO CANTO, J.
LÜBBERSTEDT, T.
KOCH, M.
STUDER, B.
author2_role author
author
author
author
author
author
author
author_facet CROPANO, C.
MANZANARES, CH.
YATES, S.
COPETTI, D.
DO CANTO, J.
LÜBBERSTEDT, T.
KOCH, M.
STUDER, B.
author_role author
bitstream.checksum.fl_str_mv 39d1385d04fefc6c183aa7fef06acea5
bitstream.checksumAlgorithm.fl_str_mv MD5
bitstream.url.fl_str_mv https://redi.anii.org.uy/jspui/bitstream/20.500.12381/2012/1/sword-2022-10-20T22%3a57%3a47.original.xml
collection AINFO
dc.creator.none.fl_str_mv CROPANO, C.
MANZANARES, CH.
YATES, S.
COPETTI, D.
DO CANTO, J.
LÜBBERSTEDT, T.
KOCH, M.
STUDER, B.
dc.date.accessioned.none.fl_str_mv 2022-10-21T01:57:47Z
dc.date.available.none.fl_str_mv 2022-10-21T01:57:47Z
dc.date.issued.none.fl_str_mv 2021
dc.date.updated.none.fl_str_mv 2022-10-21T01:57:47Z
dc.description.abstract.none.fl_txt_mv Abstract: Self-incompatibility (SI) is a genetic mechanism preventing self-pollination in ?40% of plant species. Two multiallelic loci, called S and Z, control the gametophytic SI system of the grass family (Poaceae), which contains all major forage grasses. Loci independentfrom S and Z have been reported to disrupt SI and lead to self-compatibility (SC). A locus causing SC in perennial ryegrass (Lolium perenne L.) was previously mapped on linkage group (LG) 5 in an F2 population segregating for SC. Using a subset of the same population (n = 68), we first performed low-resolution quantitative trait locus (QTL) mapping to exclude the presence of additional, previously undetected contributors to SC. The previously reported QTL on LG 5 explained 38.4% of the phenotypic variation, and no significant contribution from other genomic regions was found. This was verified by the presence of significantly distorted markers in the region overlapping with the QTL. Second, we fine mapped the QTL to 0.26 centimorgan (cM) using additional 2,056 plants and 23 novel sequence-based markers. Using Italian ryegrass (Lolium multiflorum Lam.) genome assembly as a reference, the markers flanking SC were estimated to span a ?3 Mb region encoding for 57 predicted genes. Among these, seven genes were proposed as relevant candidate genes based on their annotation and function described in previous studies. Our study is a step forward to identify SC genes in forage grasses and provides diagnostic markers for marker-assisted introgression of SC into elite germplasm.
dc.identifier.none.fl_str_mv http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62506&biblioteca=vazio&busca=62506&qFacets=62506
dc.language.iso.none.fl_str_mv en
eng
dc.rights.es.fl_str_mv Acceso abierto
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:AINFO
instname:Instituto Nacional de Investigación Agropecuaria
instacron:Instituto Nacional de Investigación Agropecuaria
dc.subject.none.fl_str_mv Self-incompatibility (SI)
Perennial ryegrass (Lolium perenne L.)
Self-compatibility (SC)
Segregation distortion
Fine mapping
candidate genes
RAIGRAS PERENNE
dc.title.none.fl_str_mv Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
dc.type.none.fl_str_mv Article
PublishedVersion
info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Abstract: Self-incompatibility (SI) is a genetic mechanism preventing self-pollination in ?40% of plant species. Two multiallelic loci, called S and Z, control the gametophytic SI system of the grass family (Poaceae), which contains all major forage grasses. Loci independentfrom S and Z have been reported to disrupt SI and lead to self-compatibility (SC). A locus causing SC in perennial ryegrass (Lolium perenne L.) was previously mapped on linkage group (LG) 5 in an F2 population segregating for SC. Using a subset of the same population (n = 68), we first performed low-resolution quantitative trait locus (QTL) mapping to exclude the presence of additional, previously undetected contributors to SC. The previously reported QTL on LG 5 explained 38.4% of the phenotypic variation, and no significant contribution from other genomic regions was found. This was verified by the presence of significantly distorted markers in the region overlapping with the QTL. Second, we fine mapped the QTL to 0.26 centimorgan (cM) using additional 2,056 plants and 23 novel sequence-based markers. Using Italian ryegrass (Lolium multiflorum Lam.) genome assembly as a reference, the markers flanking SC were estimated to span a ?3 Mb region encoding for 57 predicted genes. Among these, seven genes were proposed as relevant candidate genes based on their annotation and function described in previous studies. Our study is a step forward to identify SC genes in forage grasses and provides diagnostic markers for marker-assisted introgression of SC into elite germplasm.
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spelling 2022-10-21T01:57:47Z2022-10-21T01:57:47Z20212022-10-21T01:57:47Zhttp://www.ainfo.inia.uy/consulta/busca?b=pc&id=62506&biblioteca=vazio&busca=62506&qFacets=62506Abstract: Self-incompatibility (SI) is a genetic mechanism preventing self-pollination in ?40% of plant species. Two multiallelic loci, called S and Z, control the gametophytic SI system of the grass family (Poaceae), which contains all major forage grasses. Loci independentfrom S and Z have been reported to disrupt SI and lead to self-compatibility (SC). A locus causing SC in perennial ryegrass (Lolium perenne L.) was previously mapped on linkage group (LG) 5 in an F2 population segregating for SC. Using a subset of the same population (n = 68), we first performed low-resolution quantitative trait locus (QTL) mapping to exclude the presence of additional, previously undetected contributors to SC. The previously reported QTL on LG 5 explained 38.4% of the phenotypic variation, and no significant contribution from other genomic regions was found. This was verified by the presence of significantly distorted markers in the region overlapping with the QTL. Second, we fine mapped the QTL to 0.26 centimorgan (cM) using additional 2,056 plants and 23 novel sequence-based markers. Using Italian ryegrass (Lolium multiflorum Lam.) genome assembly as a reference, the markers flanking SC were estimated to span a ?3 Mb region encoding for 57 predicted genes. Among these, seven genes were proposed as relevant candidate genes based on their annotation and function described in previous studies. Our study is a step forward to identify SC genes in forage grasses and provides diagnostic markers for marker-assisted introgression of SC into elite germplasm.https://hdl.handle.net/20.500.12381/2012enenginfo:eu-repo/semantics/openAccessAcceso abiertoSelf-incompatibility (SI)Perennial ryegrass (Lolium perenne L.)Self-compatibility (SC)Segregation distortionFine mappingcandidate genesRAIGRAS PERENNEIdentification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).ArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación AgropecuariaCROPANO, C.MANZANARES, CH.YATES, S.COPETTI, D.DO CANTO, J.LÜBBERSTEDT, T.KOCH, M.STUDER, B.SWORDsword-2022-10-20T22:57:47.original.xmlOriginal SWORD entry documentapplication/octet-stream3035https://redi.anii.org.uy/jspui/bitstream/20.500.12381/2012/1/sword-2022-10-20T22%3a57%3a47.original.xml39d1385d04fefc6c183aa7fef06acea5MD5120.500.12381/20122022-10-20 22:57:48.078oai:redi.anii.org.uy:20.500.12381/2012Gobiernohttp://inia.uyhttps://redi.anii.org.uy/oai/requestlorrego@inia.org.uyUruguayopendoar:2022-10-21T01:57:48AINFO - Instituto Nacional de Investigación Agropecuariafalse
spellingShingle Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
CROPANO, C.
Self-incompatibility (SI)
Perennial ryegrass (Lolium perenne L.)
Self-compatibility (SC)
Segregation distortion
Fine mapping
candidate genes
RAIGRAS PERENNE
status_str publishedVersion
title Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
title_full Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
title_fullStr Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
title_full_unstemmed Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
title_short Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
title_sort Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.).
topic Self-incompatibility (SI)
Perennial ryegrass (Lolium perenne L.)
Self-compatibility (SC)
Segregation distortion
Fine mapping
candidate genes
RAIGRAS PERENNE
url http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62506&biblioteca=vazio&busca=62506&qFacets=62506