Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains

Castells Bauer, Matías - López Tort, Luis Fernando - Colina, Rodney - Cristina, Juan

Resumen:

On 30th January 2020, an outbreak of atypical pneumonia caused by a novelbetacoronavirus, named severe acute respiratory syndrome coronavirus 2(SARS‐CoV‐2), was declared a public health emergency of international concern bythe World Health Organization. For this reason, a detailed evolutionary analysis ofSARS‐CoV‐2 strains currently circulating in different geographic regions of theworld was performed. A compositional analysis as well as a Bayesian coalescentanalysis of complete genome sequences of SARS‐CoV‐2 strains recently isolated inEurope, North America, South America, and Asia was performed. The results ofthese studies revealed a diversification of SARS‐CoV‐2 strains in three differentgenetic clades. Co‐circulation of different clades in different countries, as well asdifferent genetic lineages within different clades were observed. The time of themost recent common ancestor was established to be around 1st November 2019.A mean rate of evolution of 6.57 × 10−4substitutions per site per year was found.A significant migration rate per genetic lineage per year from Europe to SouthAmerica was also observed. The results of these studies revealed an increasingdiversification of SARS‐CoV‐2 strains. High evolutionary rates and fast populationgrowth characterizes the population dynamics of SARS‐CoV‐2 strains.


Detalles Bibliográficos
2020
Coalescent
Coronavirus
Evolution
SARS‐CoV‐2
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/30811
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Castells Bauer, Matías
author2 López Tort, Luis Fernando
Colina, Rodney
Cristina, Juan
author2_role author
author
author
author_facet Castells Bauer, Matías
López Tort, Luis Fernando
Colina, Rodney
Cristina, Juan
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Castells Bauer Matías, Universidad de la República (Uruguay). CENUR
López Tort Luis Fernando, Universidad de la República (Uruguay). CENUR
Colina Rodney, Universidad de la República (Uruguay). CENUR
Cristina Juan, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares
dc.creator.none.fl_str_mv Castells Bauer, Matías
López Tort, Luis Fernando
Colina, Rodney
Cristina, Juan
dc.date.accessioned.none.fl_str_mv 2022-02-09T13:13:42Z
dc.date.available.none.fl_str_mv 2022-02-09T13:13:42Z
dc.date.issued.none.fl_str_mv 2020
dc.description.abstract.none.fl_txt_mv On 30th January 2020, an outbreak of atypical pneumonia caused by a novelbetacoronavirus, named severe acute respiratory syndrome coronavirus 2(SARS‐CoV‐2), was declared a public health emergency of international concern bythe World Health Organization. For this reason, a detailed evolutionary analysis ofSARS‐CoV‐2 strains currently circulating in different geographic regions of theworld was performed. A compositional analysis as well as a Bayesian coalescentanalysis of complete genome sequences of SARS‐CoV‐2 strains recently isolated inEurope, North America, South America, and Asia was performed. The results ofthese studies revealed a diversification of SARS‐CoV‐2 strains in three differentgenetic clades. Co‐circulation of different clades in different countries, as well asdifferent genetic lineages within different clades were observed. The time of themost recent common ancestor was established to be around 1st November 2019.A mean rate of evolution of 6.57 × 10−4substitutions per site per year was found.A significant migration rate per genetic lineage per year from Europe to SouthAmerica was also observed. The results of these studies revealed an increasingdiversification of SARS‐CoV‐2 strains. High evolutionary rates and fast populationgrowth characterizes the population dynamics of SARS‐CoV‐2 strains.
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dc.identifier.citation.es.fl_str_mv Castells Bauer, M, López-Tort, F, Colina, R [y otros] "Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains". Journal of Medical Virology. [en línea] 2020, 92: 2165–2172. 8 h. DOI: 10.1002/jmv.26018
dc.identifier.doi.none.fl_str_mv 10.1002/jmv.26018
dc.identifier.issn.none.fl_str_mv 1096-9071
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/30811
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv Wiley-Liss
dc.relation.ispartof.es.fl_str_mv Journal of Medical Virology, 2020, 92: 2165–2172
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Coalescent
Coronavirus
Evolution
SARS‐CoV‐2
dc.title.none.fl_str_mv Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description On 30th January 2020, an outbreak of atypical pneumonia caused by a novelbetacoronavirus, named severe acute respiratory syndrome coronavirus 2(SARS‐CoV‐2), was declared a public health emergency of international concern bythe World Health Organization. For this reason, a detailed evolutionary analysis ofSARS‐CoV‐2 strains currently circulating in different geographic regions of theworld was performed. A compositional analysis as well as a Bayesian coalescentanalysis of complete genome sequences of SARS‐CoV‐2 strains recently isolated inEurope, North America, South America, and Asia was performed. The results ofthese studies revealed a diversification of SARS‐CoV‐2 strains in three differentgenetic clades. Co‐circulation of different clades in different countries, as well asdifferent genetic lineages within different clades were observed. The time of themost recent common ancestor was established to be around 1st November 2019.A mean rate of evolution of 6.57 × 10−4substitutions per site per year was found.A significant migration rate per genetic lineage per year from Europe to SouthAmerica was also observed. The results of these studies revealed an increasingdiversification of SARS‐CoV‐2 strains. High evolutionary rates and fast populationgrowth characterizes the population dynamics of SARS‐CoV‐2 strains.
eu_rights_str_mv openAccess
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identifier_str_mv Castells Bauer, M, López-Tort, F, Colina, R [y otros] "Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains". Journal of Medical Virology. [en línea] 2020, 92: 2165–2172. 8 h. DOI: 10.1002/jmv.26018
1096-9071
10.1002/jmv.26018
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publishDate 2020
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Castells Bauer Matías, Universidad de la República (Uruguay). CENURLópez Tort Luis Fernando, Universidad de la República (Uruguay). CENURColina Rodney, Universidad de la República (Uruguay). CENURCristina Juan, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares2022-02-09T13:13:42Z2022-02-09T13:13:42Z2020Castells Bauer, M, López-Tort, F, Colina, R [y otros] "Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains". Journal of Medical Virology. [en línea] 2020, 92: 2165–2172. 8 h. DOI: 10.1002/jmv.260181096-9071https://hdl.handle.net/20.500.12008/3081110.1002/jmv.26018On 30th January 2020, an outbreak of atypical pneumonia caused by a novelbetacoronavirus, named severe acute respiratory syndrome coronavirus 2(SARS‐CoV‐2), was declared a public health emergency of international concern bythe World Health Organization. For this reason, a detailed evolutionary analysis ofSARS‐CoV‐2 strains currently circulating in different geographic regions of theworld was performed. A compositional analysis as well as a Bayesian coalescentanalysis of complete genome sequences of SARS‐CoV‐2 strains recently isolated inEurope, North America, South America, and Asia was performed. The results ofthese studies revealed a diversification of SARS‐CoV‐2 strains in three differentgenetic clades. Co‐circulation of different clades in different countries, as well asdifferent genetic lineages within different clades were observed. The time of themost recent common ancestor was established to be around 1st November 2019.A mean rate of evolution of 6.57 × 10−4substitutions per site per year was found.A significant migration rate per genetic lineage per year from Europe to SouthAmerica was also observed. The results of these studies revealed an increasingdiversification of SARS‐CoV‐2 strains. High evolutionary rates and fast populationgrowth characterizes the population dynamics of SARS‐CoV‐2 strains.Submitted by Verdun Juan Pablo (jverdun@fcien.edu.uy) on 2022-02-08T20:20:10Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1002jmv.26018.pdf: 1715976 bytes, checksum: 85960e57066369289ee95ecb54e69031 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-02-09T11:34:15Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1002jmv.26018.pdf: 1715976 bytes, checksum: 85960e57066369289ee95ecb54e69031 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-02-09T13:13:42Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1002jmv.26018.pdf: 1715976 bytes, checksum: 85960e57066369289ee95ecb54e69031 (MD5) Previous issue date: 20208 h.application/pdfenengWiley-LissJournal of Medical Virology, 2020, 92: 2165–2172Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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spellingShingle Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
Castells Bauer, Matías
Coalescent
Coronavirus
Evolution
SARS‐CoV‐2
status_str publishedVersion
title Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
title_full Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
title_fullStr Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
title_full_unstemmed Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
title_short Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
title_sort Evidence of increasing diversification of emerging Severe Acute Respiratory Syndrome Coronavirus 2 strains
topic Coalescent
Coronavirus
Evolution
SARS‐CoV‐2
url https://hdl.handle.net/20.500.12008/30811