Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer

Oliveira-Rizzo, Carolina - Ottati Braselli, María Carolina - Fort Canobra, Rafael S - Chávez, Santiago - Trinidad Barnech, Juan Manuel - Di Paolo, Andrés - Garat, Beatriz - Sotelo Silveira, José Roberto - Duhagon, María Ana

Resumen:

Prostate cancer is a major health problem worldwide. MiR-183 is an oncomiR and a candidate biomarker in prostate cancer, affecting various pathways responsible for disease initiation and progression. We sought to discover the most relevant processes controlled by miR-183 through an unbiased transcriptomic approach using prostate cell lines and patient tissues to identify miR-183 responsive genes and pathways. Gain of unction experiments, reporter gene assays, and transcript and protein measurements were conducted to validate predicted functional effects and protein mediators. A total of 135 candidate miR-183 target genes overrepresenting cell adhesion terms were inferred from the integrated transcriptomic analysis. Cell attachment, spreading assays and focal adhesion quantification of miR-183-overexpressing cells confirmed the predicted reduction in cell adhesion. ITGB1 was validated as a major target of repression by miR-183 as well as a mediator of cell adhesion in response to miR-183. The reporter gene assay and PAR-CLIP read mapping suggest that ITGB1 may be a direct target of miR-183. The negative correlation between miR-183 and ITGB1 expression in prostate cancer cohorts supports their interaction in the clinical set. Overall, cell adhesion was uncovered as a major pathway controlled by miR-183 in prostate cancer, and ITGB1 was identified as a relevant mediator of this effect.


Detalles Bibliográficos
2022
CSIC: I+D 2016_487
CSIC: I+D 2020_566
Cancer
MicroRNA
Focal adhesion
miR-183
Prostate
ITGB
TCGA
AGO-PAR-CLIP
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/41376
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Oliveira-Rizzo, Carolina
author2 Ottati Braselli, María Carolina
Fort Canobra, Rafael S
Chávez, Santiago
Trinidad Barnech, Juan Manuel
Di Paolo, Andrés
Garat, Beatriz
Sotelo Silveira, José Roberto
Duhagon, María Ana
author2_role author
author
author
author
author
author
author
author
author_facet Oliveira-Rizzo, Carolina
Ottati Braselli, María Carolina
Fort Canobra, Rafael S
Chávez, Santiago
Trinidad Barnech, Juan Manuel
Di Paolo, Andrés
Garat, Beatriz
Sotelo Silveira, José Roberto
Duhagon, María Ana
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Oliveira-Rizzo Carolina, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Ottati Braselli María Carolina, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Fort Canobra Rafael S, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Chávez Santiago, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Trinidad Barnech Juan Manuel, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Di Paolo Andrés, IIBCE
Garat Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Sotelo Silveira José Roberto, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Duhagon María Ana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
dc.creator.none.fl_str_mv Oliveira-Rizzo, Carolina
Ottati Braselli, María Carolina
Fort Canobra, Rafael S
Chávez, Santiago
Trinidad Barnech, Juan Manuel
Di Paolo, Andrés
Garat, Beatriz
Sotelo Silveira, José Roberto
Duhagon, María Ana
dc.date.accessioned.none.fl_str_mv 2023-11-21T14:36:02Z
dc.date.available.none.fl_str_mv 2023-11-21T14:36:02Z
dc.date.issued.none.fl_str_mv 2022
dc.description.abstract.none.fl_txt_mv Prostate cancer is a major health problem worldwide. MiR-183 is an oncomiR and a candidate biomarker in prostate cancer, affecting various pathways responsible for disease initiation and progression. We sought to discover the most relevant processes controlled by miR-183 through an unbiased transcriptomic approach using prostate cell lines and patient tissues to identify miR-183 responsive genes and pathways. Gain of unction experiments, reporter gene assays, and transcript and protein measurements were conducted to validate predicted functional effects and protein mediators. A total of 135 candidate miR-183 target genes overrepresenting cell adhesion terms were inferred from the integrated transcriptomic analysis. Cell attachment, spreading assays and focal adhesion quantification of miR-183-overexpressing cells confirmed the predicted reduction in cell adhesion. ITGB1 was validated as a major target of repression by miR-183 as well as a mediator of cell adhesion in response to miR-183. The reporter gene assay and PAR-CLIP read mapping suggest that ITGB1 may be a direct target of miR-183. The negative correlation between miR-183 and ITGB1 expression in prostate cancer cohorts supports their interaction in the clinical set. Overall, cell adhesion was uncovered as a major pathway controlled by miR-183 in prostate cancer, and ITGB1 was identified as a relevant mediator of this effect.
dc.description.sponsorship.none.fl_txt_mv CSIC: I+D 2016_487
CSIC: I+D 2020_566
dc.format.extent.es.fl_str_mv 21 h.
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dc.identifier.citation.es.fl_str_mv Oliveira-Rizzo, C, Ottati Braselli, M, Fort Canobra, R. y otros. "Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer". Non-Coding RNA. [en línea] 2022, 8(1): 11.21 h. DOI: 10.3390/ncrna8010011
dc.identifier.doi.none.fl_str_mv 10.3390/ncrna8010011
dc.identifier.issn.none.fl_str_mv 2311-553X
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/41376
dc.language.iso.none.fl_str_mv en_US
eng
dc.publisher.es.fl_str_mv MDPI
dc.relation.ispartof.es.fl_str_mv Non-Coding RNA, 2022, 8(1): 11.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Cancer
MicroRNA
Focal adhesion
miR-183
Prostate
ITGB
TCGA
AGO-PAR-CLIP
dc.title.none.fl_str_mv Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Prostate cancer is a major health problem worldwide. MiR-183 is an oncomiR and a candidate biomarker in prostate cancer, affecting various pathways responsible for disease initiation and progression. We sought to discover the most relevant processes controlled by miR-183 through an unbiased transcriptomic approach using prostate cell lines and patient tissues to identify miR-183 responsive genes and pathways. Gain of unction experiments, reporter gene assays, and transcript and protein measurements were conducted to validate predicted functional effects and protein mediators. A total of 135 candidate miR-183 target genes overrepresenting cell adhesion terms were inferred from the integrated transcriptomic analysis. Cell attachment, spreading assays and focal adhesion quantification of miR-183-overexpressing cells confirmed the predicted reduction in cell adhesion. ITGB1 was validated as a major target of repression by miR-183 as well as a mediator of cell adhesion in response to miR-183. The reporter gene assay and PAR-CLIP read mapping suggest that ITGB1 may be a direct target of miR-183. The negative correlation between miR-183 and ITGB1 expression in prostate cancer cohorts supports their interaction in the clinical set. Overall, cell adhesion was uncovered as a major pathway controlled by miR-183 in prostate cancer, and ITGB1 was identified as a relevant mediator of this effect.
eu_rights_str_mv openAccess
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identifier_str_mv Oliveira-Rizzo, C, Ottati Braselli, M, Fort Canobra, R. y otros. "Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer". Non-Coding RNA. [en línea] 2022, 8(1): 11.21 h. DOI: 10.3390/ncrna8010011
2311-553X
10.3390/ncrna8010011
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
language eng
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network_acronym_str COLIBRI
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publishDate 2022
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Oliveira-Rizzo Carolina, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Ottati Braselli María Carolina, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Fort Canobra Rafael S, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Chávez Santiago, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Trinidad Barnech Juan Manuel, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Di Paolo Andrés, IIBCEGarat Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Sotelo Silveira José Roberto, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Duhagon María Ana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.2023-11-21T14:36:02Z2023-11-21T14:36:02Z2022Oliveira-Rizzo, C, Ottati Braselli, M, Fort Canobra, R. y otros. "Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer". Non-Coding RNA. [en línea] 2022, 8(1): 11.21 h. DOI: 10.3390/ncrna80100112311-553Xhttps://hdl.handle.net/20.500.12008/4137610.3390/ncrna8010011Prostate cancer is a major health problem worldwide. MiR-183 is an oncomiR and a candidate biomarker in prostate cancer, affecting various pathways responsible for disease initiation and progression. We sought to discover the most relevant processes controlled by miR-183 through an unbiased transcriptomic approach using prostate cell lines and patient tissues to identify miR-183 responsive genes and pathways. Gain of unction experiments, reporter gene assays, and transcript and protein measurements were conducted to validate predicted functional effects and protein mediators. A total of 135 candidate miR-183 target genes overrepresenting cell adhesion terms were inferred from the integrated transcriptomic analysis. Cell attachment, spreading assays and focal adhesion quantification of miR-183-overexpressing cells confirmed the predicted reduction in cell adhesion. ITGB1 was validated as a major target of repression by miR-183 as well as a mediator of cell adhesion in response to miR-183. The reporter gene assay and PAR-CLIP read mapping suggest that ITGB1 may be a direct target of miR-183. The negative correlation between miR-183 and ITGB1 expression in prostate cancer cohorts supports their interaction in the clinical set. Overall, cell adhesion was uncovered as a major pathway controlled by miR-183 in prostate cancer, and ITGB1 was identified as a relevant mediator of this effect.Submitted by Farías Verónica (vfarias@fcien.edu.uy) on 2023-11-21T14:13:16Z No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 103390ncrna8010011.pdf: 2160237 bytes, checksum: 430f248f2dfbf2ebba5a82cde6908258 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-11-21T14:22:29Z (GMT) No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 103390ncrna8010011.pdf: 2160237 bytes, checksum: 430f248f2dfbf2ebba5a82cde6908258 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-11-21T14:36:02Z (GMT). No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 103390ncrna8010011.pdf: 2160237 bytes, checksum: 430f248f2dfbf2ebba5a82cde6908258 (MD5) Previous issue date: 2022CSIC: I+D 2016_487CSIC: I+D 2020_56621 h.application/pdfen_USengMDPINon-Coding RNA, 2022, 8(1): 11.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)CancerMicroRNAFocal adhesionmiR-183ProstateITGBTCGAAGO-PAR-CLIPHsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancerArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaOliveira-Rizzo, CarolinaOttati Braselli, María CarolinaFort Canobra, Rafael SChávez, SantiagoTrinidad Barnech, Juan ManuelDi Paolo, AndrésGarat, BeatrizSotelo Silveira, José RobertoDuhagon, María AnaLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/41376/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; charset=utf-844http://localhost:8080/xmlui/bitstream/20.500.12008/41376/2/license_urla0ebbeafb9d2ec7cbb19d7137ebc392cMD52license_textlicense_texttext/html; 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- Universidad de la Repúblicafalse
spellingShingle Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
Oliveira-Rizzo, Carolina
Cancer
MicroRNA
Focal adhesion
miR-183
Prostate
ITGB
TCGA
AGO-PAR-CLIP
status_str publishedVersion
title Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
title_full Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
title_fullStr Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
title_full_unstemmed Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
title_short Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
title_sort Hsa-miR-183-5p modulates cell adhesion by repression of ITGB1 expression in prostate cancer
topic Cancer
MicroRNA
Focal adhesion
miR-183
Prostate
ITGB
TCGA
AGO-PAR-CLIP
url https://hdl.handle.net/20.500.12008/41376