Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate

Freeman, Samuel L. - Skafar Amen, Vera - Kwon, Hanna - Fielding, Alistair J. - Moody, Peter C. E. - Martínez, Alejandra - Issoglio, Federico M. - Inchausti, Lucas - Smircich, Pablo - Zeida, Ari - Piacenza, Lucía - Radi, Rafael - Raven, Emma L.

Resumen:

The protozoan parasite Trypanosoma cruzi is the causative agent of American trypanosomiasis, otherwise known as Chagas disease. To survive in the host, the T. cruzi parasite needs antioxidant defense systems. One of these is a hybrid heme peroxidase, the T. cruzi ascorbate peroxidase-cytochrome c peroxidase enzyme (TcAPx-CcP). TcAPx-CcP has high sequence identity to members of the class I peroxidase family, notably ascorbate peroxidase (APX) and cytochrome c peroxidase (CcP), as well as a mitochondrial peroxidase from Leishmania major (LmP). The aim of this work was to solve the structure and examine the reactivity of the TcAPx-CcP enzyme. Low temperature electron paramagnetic resonance spectra support the formation of an exchange-coupled [Fe(IV)=O Trp233•+] compound I radical species, analogous to that used in CcP and LmP. We demonstrate that TcAPx-CcP is similar in overall structure to APX and CcP, but there are differences in the substrate-binding regions. Furthermore, the electron transfer pathway from cytochrome c to the heme in CcP and LmP is preserved in the TcAPx-CcP structure. Integration of steady state kinetic experiments, molecular dynamic simulations, and bioinformatic analyses indicates that TcAPx-CcP preferentially oxidizes cytochrome c but is still competent for oxidization of ascorbate. The results reveal that TcAPx-CcP is a credible cytochrome c peroxidase, which can also bind and use ascorbate in host cells, where concentrations are in the millimolar range. Thus, kinetically and functionally TcAPx-CcP can be considered a hybrid peroxidase.


Detalles Bibliográficos
2022
Peroxidase
Chagas disease
Ascorbate
Cytochrome C.
Heme
Oxidants
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/38476
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Freeman, Samuel L.
author2 Skafar Amen, Vera
Kwon, Hanna
Fielding, Alistair J.
Moody, Peter C. E.
Martínez, Alejandra
Issoglio, Federico M.
Inchausti, Lucas
Smircich, Pablo
Zeida, Ari
Piacenza, Lucía
Radi, Rafael
Raven, Emma L.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author_facet Freeman, Samuel L.
Skafar Amen, Vera
Kwon, Hanna
Fielding, Alistair J.
Moody, Peter C. E.
Martínez, Alejandra
Issoglio, Federico M.
Inchausti, Lucas
Smircich, Pablo
Zeida, Ari
Piacenza, Lucía
Radi, Rafael
Raven, Emma L.
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Freeman Samuel L.
Skafar Amen Vera, Universidad de la República (Uruguay). Facultad de Medicina.
Kwon Hanna
Fielding Alistair J.
Moody Peter C. E.
Martínez Alejandra, Universidad de la República (Uruguay). Facultad de Medicina.
Issoglio Federico M.
Inchausti Lucas, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Smircich Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Zeida Ari, Universidad de la República (Uruguay). Facultad de Medicina.
Piacenza Lucía, Universidad de la República (Uruguay). Facultad de Medicina.
Radi Rafael, Universidad de la República (Uruguay). Facultad de Medicina.
Raven Emma L.
dc.creator.none.fl_str_mv Freeman, Samuel L.
Skafar Amen, Vera
Kwon, Hanna
Fielding, Alistair J.
Moody, Peter C. E.
Martínez, Alejandra
Issoglio, Federico M.
Inchausti, Lucas
Smircich, Pablo
Zeida, Ari
Piacenza, Lucía
Radi, Rafael
Raven, Emma L.
dc.date.accessioned.none.fl_str_mv 2023-07-27T14:05:47Z
dc.date.available.none.fl_str_mv 2023-07-27T14:05:47Z
dc.date.issued.none.fl_str_mv 2022
dc.description.abstract.none.fl_txt_mv The protozoan parasite Trypanosoma cruzi is the causative agent of American trypanosomiasis, otherwise known as Chagas disease. To survive in the host, the T. cruzi parasite needs antioxidant defense systems. One of these is a hybrid heme peroxidase, the T. cruzi ascorbate peroxidase-cytochrome c peroxidase enzyme (TcAPx-CcP). TcAPx-CcP has high sequence identity to members of the class I peroxidase family, notably ascorbate peroxidase (APX) and cytochrome c peroxidase (CcP), as well as a mitochondrial peroxidase from Leishmania major (LmP). The aim of this work was to solve the structure and examine the reactivity of the TcAPx-CcP enzyme. Low temperature electron paramagnetic resonance spectra support the formation of an exchange-coupled [Fe(IV)=O Trp233•+] compound I radical species, analogous to that used in CcP and LmP. We demonstrate that TcAPx-CcP is similar in overall structure to APX and CcP, but there are differences in the substrate-binding regions. Furthermore, the electron transfer pathway from cytochrome c to the heme in CcP and LmP is preserved in the TcAPx-CcP structure. Integration of steady state kinetic experiments, molecular dynamic simulations, and bioinformatic analyses indicates that TcAPx-CcP preferentially oxidizes cytochrome c but is still competent for oxidization of ascorbate. The results reveal that TcAPx-CcP is a credible cytochrome c peroxidase, which can also bind and use ascorbate in host cells, where concentrations are in the millimolar range. Thus, kinetically and functionally TcAPx-CcP can be considered a hybrid peroxidase.
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dc.identifier.citation.es.fl_str_mv Freeman, S, Skafar Amen, V, Kwon, H, [y otros autores]. "Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate". Journal of Biological Chemistry. [en línea] 2022, 298(8): 102204. 10 h. DOI: 10.1016/j.jbc.2022.102204
dc.identifier.doi.none.fl_str_mv 10.1016/j.jbc.2022.102204
dc.identifier.issn.none.fl_str_mv 0021-9258
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/38476
dc.language.iso.none.fl_str_mv en_US
eng
dc.publisher.es.fl_str_mv Elsevier Inc.
dc.relation.ispartof.es.fl_str_mv Journal of Biological Chemistry, 2022, 298(8): 102204.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Peroxidase
Chagas disease
Ascorbate
Cytochrome C.
Heme
Oxidants
dc.title.none.fl_str_mv Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description The protozoan parasite Trypanosoma cruzi is the causative agent of American trypanosomiasis, otherwise known as Chagas disease. To survive in the host, the T. cruzi parasite needs antioxidant defense systems. One of these is a hybrid heme peroxidase, the T. cruzi ascorbate peroxidase-cytochrome c peroxidase enzyme (TcAPx-CcP). TcAPx-CcP has high sequence identity to members of the class I peroxidase family, notably ascorbate peroxidase (APX) and cytochrome c peroxidase (CcP), as well as a mitochondrial peroxidase from Leishmania major (LmP). The aim of this work was to solve the structure and examine the reactivity of the TcAPx-CcP enzyme. Low temperature electron paramagnetic resonance spectra support the formation of an exchange-coupled [Fe(IV)=O Trp233•+] compound I radical species, analogous to that used in CcP and LmP. We demonstrate that TcAPx-CcP is similar in overall structure to APX and CcP, but there are differences in the substrate-binding regions. Furthermore, the electron transfer pathway from cytochrome c to the heme in CcP and LmP is preserved in the TcAPx-CcP structure. Integration of steady state kinetic experiments, molecular dynamic simulations, and bioinformatic analyses indicates that TcAPx-CcP preferentially oxidizes cytochrome c but is still competent for oxidization of ascorbate. The results reveal that TcAPx-CcP is a credible cytochrome c peroxidase, which can also bind and use ascorbate in host cells, where concentrations are in the millimolar range. Thus, kinetically and functionally TcAPx-CcP can be considered a hybrid peroxidase.
eu_rights_str_mv openAccess
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identifier_str_mv Freeman, S, Skafar Amen, V, Kwon, H, [y otros autores]. "Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate". Journal of Biological Chemistry. [en línea] 2022, 298(8): 102204. 10 h. DOI: 10.1016/j.jbc.2022.102204
0021-9258
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publishDate 2022
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repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Freeman Samuel L.Skafar Amen Vera, Universidad de la República (Uruguay). Facultad de Medicina.Kwon HannaFielding Alistair J.Moody Peter C. E.Martínez Alejandra, Universidad de la República (Uruguay). Facultad de Medicina.Issoglio Federico M.Inchausti Lucas, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Smircich Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Zeida Ari, Universidad de la República (Uruguay). Facultad de Medicina.Piacenza Lucía, Universidad de la República (Uruguay). Facultad de Medicina.Radi Rafael, Universidad de la República (Uruguay). Facultad de Medicina.Raven Emma L.2023-07-27T14:05:47Z2023-07-27T14:05:47Z2022Freeman, S, Skafar Amen, V, Kwon, H, [y otros autores]. "Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate". Journal of Biological Chemistry. [en línea] 2022, 298(8): 102204. 10 h. DOI: 10.1016/j.jbc.2022.1022040021-9258https://hdl.handle.net/20.500.12008/3847610.1016/j.jbc.2022.102204The protozoan parasite Trypanosoma cruzi is the causative agent of American trypanosomiasis, otherwise known as Chagas disease. To survive in the host, the T. cruzi parasite needs antioxidant defense systems. One of these is a hybrid heme peroxidase, the T. cruzi ascorbate peroxidase-cytochrome c peroxidase enzyme (TcAPx-CcP). TcAPx-CcP has high sequence identity to members of the class I peroxidase family, notably ascorbate peroxidase (APX) and cytochrome c peroxidase (CcP), as well as a mitochondrial peroxidase from Leishmania major (LmP). The aim of this work was to solve the structure and examine the reactivity of the TcAPx-CcP enzyme. Low temperature electron paramagnetic resonance spectra support the formation of an exchange-coupled [Fe(IV)=O Trp233•+] compound I radical species, analogous to that used in CcP and LmP. We demonstrate that TcAPx-CcP is similar in overall structure to APX and CcP, but there are differences in the substrate-binding regions. Furthermore, the electron transfer pathway from cytochrome c to the heme in CcP and LmP is preserved in the TcAPx-CcP structure. Integration of steady state kinetic experiments, molecular dynamic simulations, and bioinformatic analyses indicates that TcAPx-CcP preferentially oxidizes cytochrome c but is still competent for oxidization of ascorbate. The results reveal that TcAPx-CcP is a credible cytochrome c peroxidase, which can also bind and use ascorbate in host cells, where concentrations are in the millimolar range. Thus, kinetically and functionally TcAPx-CcP can be considered a hybrid peroxidase.Submitted by Farías Verónica (vfarias@fcien.edu.uy) on 2023-07-26T13:54:03Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 01016jjbc2022102204.pdf: 2060847 bytes, checksum: 25384f355d25f1101dce50b7396866fe (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-07-26T14:51:22Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 01016jjbc2022102204.pdf: 2060847 bytes, checksum: 25384f355d25f1101dce50b7396866fe (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-07-27T14:05:47Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 01016jjbc2022102204.pdf: 2060847 bytes, checksum: 25384f355d25f1101dce50b7396866fe (MD5) Previous issue date: 202210 h.application/pdfen_USengElsevier Inc.Journal of Biological Chemistry, 2022, 298(8): 102204.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)PeroxidaseChagas diseaseAscorbateCytochrome C.HemeOxidantsCrystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediateArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFreeman, Samuel L.Skafar Amen, VeraKwon, HannaFielding, Alistair J.Moody, Peter C. E.Martínez, AlejandraIssoglio, Federico M.Inchausti, LucasSmircich, PabloZeida, AriPiacenza, LucíaRadi, RafaelRaven, Emma L.LICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/38476/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; charset=utf-844http://localhost:8080/xmlui/bitstream/20.500.12008/38476/2/license_urla0ebbeafb9d2ec7cbb19d7137ebc392cMD52license_textlicense_texttext/html; charset=utf-838552http://localhost:8080/xmlui/bitstream/20.500.12008/38476/3/license_text2fc523bba4df4b71d4fa008ef2dea84bMD53license_rdflicense_rdfapplication/rdf+xml; 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- Universidad de la Repúblicafalse
spellingShingle Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
Freeman, Samuel L.
Peroxidase
Chagas disease
Ascorbate
Cytochrome C.
Heme
Oxidants
status_str publishedVersion
title Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
title_full Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
title_fullStr Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
title_full_unstemmed Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
title_short Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
title_sort Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate
topic Peroxidase
Chagas disease
Ascorbate
Cytochrome C.
Heme
Oxidants
url https://hdl.handle.net/20.500.12008/38476