Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’

Jenney Jr, Francis E. - Wang, Hongxin - George, Simon J. - Xiong, Jin - Guo, Yisong - Gee, Leland B. - Marizcurrena, Juan José - Castro-Sowinski, Susana - Staskiewicz, Anna - Yoda, Yoshitaka - Hu, Michael Y. - Tamasaku, Kenji - Nagasawa, Nobumoto - Li, Lei - Matsuura, Hiroaki - Doukov, Tzanko - Cramer, Stephen P.

Resumen:

Extremophile organisms are known that can metabolize at temperatures down to − 25 °C (psychrophiles) and up to 122 °C (hyperthermophiles). Understanding viability under extreme conditions is relevant for human health, biotechnological applications, and our search for life elsewhere in the universe. Information about the stability and dynamics of proteins under environmental extremes is an important factor in this regard. Here we compare the dynamics of small Fe‑S proteins – rubredoxins – from psychrophilic and hyperthermophilic microorganisms, using three different nuclear techniques as well as molecular dynamics calculations to quantify motion at the Fe site. The theory of ‘corresponding states’ posits that homologous proteins from different extremophiles have comparable flexibilities at the optimum growth temperatures of their respective organisms. Although ‘corresponding states’ would predict greater flexibility for rubredoxins that operate at low temperatures, we find that from 4 to 300 K, the dynamics of the Fe sites in these homologous proteins are essentially equivalent.

Detalles Bibliográficos
2024
Rubredoxin
Iron-Sulfur
Extremophile
Hyperthermophile
Psychrophile
Corresponding States
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/49601
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Jenney Jr, Francis E.
author2 Wang, Hongxin
George, Simon J.
Xiong, Jin
Guo, Yisong
Gee, Leland B.
Marizcurrena, Juan José
Castro-Sowinski, Susana
Staskiewicz, Anna
Yoda, Yoshitaka
Hu, Michael Y.
Tamasaku, Kenji
Nagasawa, Nobumoto
Li, Lei
Matsuura, Hiroaki
Doukov, Tzanko
Cramer, Stephen P.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author_facet Jenney Jr, Francis E.
Wang, Hongxin
George, Simon J.
Xiong, Jin
Guo, Yisong
Gee, Leland B.
Marizcurrena, Juan José
Castro-Sowinski, Susana
Staskiewicz, Anna
Yoda, Yoshitaka
Hu, Michael Y.
Tamasaku, Kenji
Nagasawa, Nobumoto
Li, Lei
Matsuura, Hiroaki
Doukov, Tzanko
Cramer, Stephen P.
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Jenney Jr Francis E.
Wang Hongxin
George Simon J.
Xiong Jin
Guo Yisong
Gee Leland B.
Marizcurrena Juan José, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Castro-Sowinski Susana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Staskiewicz Anna
Yoda Yoshitaka
Hu Michael Y.
Tamasaku Kenji
Nagasawa Nobumoto
Li Lei
Matsuura Hiroaki
Doukov Tzanko
Cramer Stephen P.
dc.creator.none.fl_str_mv Jenney Jr, Francis E.
Wang, Hongxin
George, Simon J.
Xiong, Jin
Guo, Yisong
Gee, Leland B.
Marizcurrena, Juan José
Castro-Sowinski, Susana
Staskiewicz, Anna
Yoda, Yoshitaka
Hu, Michael Y.
Tamasaku, Kenji
Nagasawa, Nobumoto
Li, Lei
Matsuura, Hiroaki
Doukov, Tzanko
Cramer, Stephen P.
dc.date.accessioned.none.fl_str_mv 2025-04-04T15:57:39Z
dc.date.available.none.fl_str_mv 2025-04-04T15:57:39Z
dc.date.issued.none.fl_str_mv 2024
dc.description.abstract.none.fl_txt_mv Extremophile organisms are known that can metabolize at temperatures down to − 25 °C (psychrophiles) and up to 122 °C (hyperthermophiles). Understanding viability under extreme conditions is relevant for human health, biotechnological applications, and our search for life elsewhere in the universe. Information about the stability and dynamics of proteins under environmental extremes is an important factor in this regard. Here we compare the dynamics of small Fe‑S proteins – rubredoxins – from psychrophilic and hyperthermophilic microorganisms, using three different nuclear techniques as well as molecular dynamics calculations to quantify motion at the Fe site. The theory of ‘corresponding states’ posits that homologous proteins from different extremophiles have comparable flexibilities at the optimum growth temperatures of their respective organisms. Although ‘corresponding states’ would predict greater flexibility for rubredoxins that operate at low temperatures, we find that from 4 to 300 K, the dynamics of the Fe sites in these homologous proteins are essentially equivalent.
dc.description.es.fl_txt_mv Información suplementaria en: https://doi.org/10.1038/s41598-024-62261-2.
dc.format.extent.es.fl_str_mv 12 h
dc.format.mimetype.es.fl_str_mv application/pdf
dc.identifier.citation.es.fl_str_mv Jenney Jr, F, Wang, H, George, S [y otros autores]. "Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’". Scientific reports. [en línea] 2024, 14: 12197. 12 h. DOI: 10.1038/s41598-024-62261-2
dc.identifier.doi.none.fl_str_mv 10.1038/s41598-024-62261-2
dc.identifier.issn.none.fl_str_mv 2045-2322
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/49601
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv Nature
dc.relation.none.fl_str_mv Scientific reports, 2024, 14: 12197.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Rubredoxin
Iron-Sulfur
Extremophile
Hyperthermophile
Psychrophile
Corresponding States
dc.title.none.fl_str_mv Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Información suplementaria en: https://doi.org/10.1038/s41598-024-62261-2.
eu_rights_str_mv openAccess
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identifier_str_mv Jenney Jr, F, Wang, H, George, S [y otros autores]. "Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’". Scientific reports. [en línea] 2024, 14: 12197. 12 h. DOI: 10.1038/s41598-024-62261-2
2045-2322
10.1038/s41598-024-62261-2
instacron_str Universidad de la República
institution Universidad de la República
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publishDate 2024
reponame_str COLIBRI
repository.mail.fl_str_mv karina.camps@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Jenney Jr Francis E.Wang HongxinGeorge Simon J.Xiong JinGuo YisongGee Leland B.Marizcurrena Juan José, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Castro-Sowinski Susana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Staskiewicz AnnaYoda YoshitakaHu Michael Y.Tamasaku KenjiNagasawa NobumotoLi LeiMatsuura HiroakiDoukov TzankoCramer Stephen P.2025-04-04T15:57:39Z2025-04-04T15:57:39Z2024Jenney Jr, F, Wang, H, George, S [y otros autores]. "Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’". Scientific reports. [en línea] 2024, 14: 12197. 12 h. DOI: 10.1038/s41598-024-62261-22045-2322https://hdl.handle.net/20.500.12008/4960110.1038/s41598-024-62261-2Información suplementaria en: https://doi.org/10.1038/s41598-024-62261-2.Extremophile organisms are known that can metabolize at temperatures down to − 25 °C (psychrophiles) and up to 122 °C (hyperthermophiles). Understanding viability under extreme conditions is relevant for human health, biotechnological applications, and our search for life elsewhere in the universe. Information about the stability and dynamics of proteins under environmental extremes is an important factor in this regard. Here we compare the dynamics of small Fe‑S proteins – rubredoxins – from psychrophilic and hyperthermophilic microorganisms, using three different nuclear techniques as well as molecular dynamics calculations to quantify motion at the Fe site. The theory of ‘corresponding states’ posits that homologous proteins from different extremophiles have comparable flexibilities at the optimum growth temperatures of their respective organisms. Although ‘corresponding states’ would predict greater flexibility for rubredoxins that operate at low temperatures, we find that from 4 to 300 K, the dynamics of the Fe sites in these homologous proteins are essentially equivalent.Submitted by Pintos Natalia (nataliapintosmvd@gmail.com) on 2025-04-04T13:16:25Z No. of bitstreams: 2 license_rdf: 24942 bytes, checksum: 58cb336ce230a47d2f88ad02838a665f (MD5) 10.1038-s41598-024-62261-2.pdf: 2129460 bytes, checksum: d95d67f455a5d1d87573ad98d8e5cf2a (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2025-04-04T14:34:45Z (GMT) No. of bitstreams: 2 license_rdf: 24942 bytes, checksum: 58cb336ce230a47d2f88ad02838a665f (MD5) 10.1038-s41598-024-62261-2.pdf: 2129460 bytes, checksum: d95d67f455a5d1d87573ad98d8e5cf2a (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2025-04-04T15:57:39Z (GMT). No. of bitstreams: 2 license_rdf: 24942 bytes, checksum: 58cb336ce230a47d2f88ad02838a665f (MD5) 10.1038-s41598-024-62261-2.pdf: 2129460 bytes, checksum: d95d67f455a5d1d87573ad98d8e5cf2a (MD5) Previous issue date: 202412 happlication/pdfenengNatureScientific reports, 2024, 14: 12197.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)RubredoxinIron-SulfurExtremophileHyperthermophilePsychrophileCorresponding StatesTemperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’Artículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaJenney Jr, Francis E.Wang, HongxinGeorge, Simon J.Xiong, JinGuo, YisongGee, Leland B.Marizcurrena, Juan JoséCastro-Sowinski, SusanaStaskiewicz, AnnaYoda, YoshitakaHu, Michael Y.Tamasaku, KenjiNagasawa, NobumotoLi, LeiMatsuura, HiroakiDoukov, TzankoCramer, Stephen P.LICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/49601/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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- Universidad de la Repúblicafalse
spellingShingle Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
Jenney Jr, Francis E.
Rubredoxin
Iron-Sulfur
Extremophile
Hyperthermophile
Psychrophile
Corresponding States
status_str publishedVersion
title Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
title_full Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
title_fullStr Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
title_full_unstemmed Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
title_short Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
title_sort Temperature‑dependent iron motion in extremophile rubredoxins – no need for ‘corresponding states’
topic Rubredoxin
Iron-Sulfur
Extremophile
Hyperthermophile
Psychrophile
Corresponding States
url https://hdl.handle.net/20.500.12008/49601