Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
Resumen:
There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells.
2021 | |
ANII: FCE_3_2018_1_ 148745 ANII: FSS_X_2018_1_149070 |
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PIWI proteins Piwi-interacting RNAs Cancer piRNAs Somatic piRNAs piRNA databases |
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Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/37390 | |
Acceso abierto | |
Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
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---|---|
author | Tosar Rovira, Juan Pablo |
author2 | García Silva, María Rosa Cayota, Alfonso |
author2_role | author author |
author_facet | Tosar Rovira, Juan Pablo García Silva, María Rosa Cayota, Alfonso |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | Tosar Rovira Juan Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares. García Silva María Rosa, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares. Cayota Alfonso, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares. |
dc.creator.none.fl_str_mv | Tosar Rovira, Juan Pablo García Silva, María Rosa Cayota, Alfonso |
dc.date.accessioned.none.fl_str_mv | 2023-06-02T15:17:45Z |
dc.date.available.none.fl_str_mv | 2023-06-02T15:17:45Z |
dc.date.issued.none.fl_str_mv | 2021 |
dc.description.abstract.none.fl_txt_mv | There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells. |
dc.description.sponsorship.none.fl_txt_mv | ANII: FCE_3_2018_1_ 148745 ANII: FSS_X_2018_1_149070 |
dc.format.extent.es.fl_str_mv | 9 h |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Tosar Rovira, J, García Silva, M y Cayota, A. "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer". RNA. [en línea] 2021, 27(4): 403-410. 9 h. DOI: 10.1261/rna.078444.120. |
dc.identifier.doi.none.fl_str_mv | 10.1261/rna.078444.120 |
dc.identifier.issn.none.fl_str_mv | 1355-8382 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/37390 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | RNA Society |
dc.relation.ispartof.es.fl_str_mv | RNA, 2021, 27(4): 403-410. |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | PIWI proteins Piwi-interacting RNAs Cancer piRNAs Somatic piRNAs piRNA databases |
dc.title.none.fl_str_mv | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_d0c1a5ee927dcc3eb0c0462fa560a2b6 |
identifier_str_mv | Tosar Rovira, J, García Silva, M y Cayota, A. "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer". RNA. [en línea] 2021, 27(4): 403-410. 9 h. DOI: 10.1261/rna.078444.120. 1355-8382 10.1261/rna.078444.120 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/37390 |
publishDate | 2021 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
spelling | Tosar Rovira Juan Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.García Silva María Rosa, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.Cayota Alfonso, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.2023-06-02T15:17:45Z2023-06-02T15:17:45Z2021Tosar Rovira, J, García Silva, M y Cayota, A. "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer". RNA. [en línea] 2021, 27(4): 403-410. 9 h. DOI: 10.1261/rna.078444.120.1355-8382https://hdl.handle.net/20.500.12008/3739010.1261/rna.078444.120There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells.Submitted by Parodi Mónica (mparodi@fcien.edu.uy) on 2023-05-30T19:06:26Z No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 101261rna078444120.pdf: 959775 bytes, checksum: 576764c23c716022a53670b8fe102110 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-06-02T14:39:58Z (GMT) No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 101261rna078444120.pdf: 959775 bytes, checksum: 576764c23c716022a53670b8fe102110 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-06-02T15:17:45Z (GMT). No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 101261rna078444120.pdf: 959775 bytes, checksum: 576764c23c716022a53670b8fe102110 (MD5) Previous issue date: 2021ANII: FCE_3_2018_1_ 148745ANII: FSS_X_2018_1_1490709 happlication/pdfenengRNA SocietyRNA, 2021, 27(4): 403-410.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse |
spellingShingle | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer Tosar Rovira, Juan Pablo PIWI proteins Piwi-interacting RNAs Cancer piRNAs Somatic piRNAs piRNA databases |
status_str | publishedVersion |
title | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
title_full | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
title_fullStr | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
title_full_unstemmed | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
title_short | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
title_sort | Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer |
topic | PIWI proteins Piwi-interacting RNAs Cancer piRNAs Somatic piRNAs piRNA databases |
url | https://hdl.handle.net/20.500.12008/37390 |