Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer

Tosar Rovira, Juan Pablo - García Silva, María Rosa - Cayota, Alfonso

Resumen:

There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells.


Detalles Bibliográficos
2021
ANII: FCE_3_2018_1_ 148745
ANII: FSS_X_2018_1_149070
PIWI proteins
Piwi-interacting RNAs
Cancer piRNAs
Somatic piRNAs
piRNA databases
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/37390
Acceso abierto
Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0)
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author Tosar Rovira, Juan Pablo
author2 García Silva, María Rosa
Cayota, Alfonso
author2_role author
author
author_facet Tosar Rovira, Juan Pablo
García Silva, María Rosa
Cayota, Alfonso
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Tosar Rovira Juan Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.
García Silva María Rosa, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.
Cayota Alfonso, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.
dc.creator.none.fl_str_mv Tosar Rovira, Juan Pablo
García Silva, María Rosa
Cayota, Alfonso
dc.date.accessioned.none.fl_str_mv 2023-06-02T15:17:45Z
dc.date.available.none.fl_str_mv 2023-06-02T15:17:45Z
dc.date.issued.none.fl_str_mv 2021
dc.description.abstract.none.fl_txt_mv There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells.
dc.description.sponsorship.none.fl_txt_mv ANII: FCE_3_2018_1_ 148745
ANII: FSS_X_2018_1_149070
dc.format.extent.es.fl_str_mv 9 h
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dc.identifier.citation.es.fl_str_mv Tosar Rovira, J, García Silva, M y Cayota, A. "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer". RNA. [en línea] 2021, 27(4): 403-410. 9 h. DOI: 10.1261/rna.078444.120.
dc.identifier.doi.none.fl_str_mv 10.1261/rna.078444.120
dc.identifier.issn.none.fl_str_mv 1355-8382
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/37390
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv RNA Society
dc.relation.ispartof.es.fl_str_mv RNA, 2021, 27(4): 403-410.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv PIWI proteins
Piwi-interacting RNAs
Cancer piRNAs
Somatic piRNAs
piRNA databases
dc.title.none.fl_str_mv Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells.
eu_rights_str_mv openAccess
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identifier_str_mv Tosar Rovira, J, García Silva, M y Cayota, A. "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer". RNA. [en línea] 2021, 27(4): 403-410. 9 h. DOI: 10.1261/rna.078444.120.
1355-8382
10.1261/rna.078444.120
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
language eng
language_invalid_str_mv en
network_acronym_str COLIBRI
network_name_str COLIBRI
oai_identifier_str oai:colibri.udelar.edu.uy:20.500.12008/37390
publishDate 2021
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0)
spelling Tosar Rovira Juan Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.García Silva María Rosa, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.Cayota Alfonso, Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares.2023-06-02T15:17:45Z2023-06-02T15:17:45Z2021Tosar Rovira, J, García Silva, M y Cayota, A. "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer". RNA. [en línea] 2021, 27(4): 403-410. 9 h. DOI: 10.1261/rna.078444.120.1355-8382https://hdl.handle.net/20.500.12008/3739010.1261/rna.078444.120There is increasing interest among cancer researchers in the study of Piwi-interacting RNAs (piRNAs), a group of small RNAs important for maintaining genome stability in the germline. Aberrant expression of piRNAs in cancer could imply an involvement of these regulatory RNAs in neoplastic transformation. On top of that, it could enable early cancer diagnosis based on RNA analysis in liquid biopsies, as piRNAs are not expected to widely circulate in the bloodstream of healthy individuals. Indeed, it has recently been shown that serum piR-54265 allows for excellent discrimination between colorectal cancer patients and healthy controls. However, we have also shown that most somatic piRNAs reported to date in mammals are actually fragments of other noncoding RNAs. Herein, we show that reports positioning piR-54265 as a noninvasive biomarker for colorectal cancer were actually measuring variations in the levels of a full-length (72 nt) small nucleolar RNA in serum. This should place a cautionary note for future research in somatic and cancer-specific piRNAs. We deeply encourage this line of research but discuss proper ways to identify somatic piRNAs without the interference of erroneous entries contained in piRNA databases.Wealso introduce the concept of miscellaneous-piRNAs (m-piRNAs) to distinguish between canonical piRNAs and other small RNAs circumstantially associated with PIWI proteins in somatic cells.Submitted by Parodi Mónica (mparodi@fcien.edu.uy) on 2023-05-30T19:06:26Z No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 101261rna078444120.pdf: 959775 bytes, checksum: 576764c23c716022a53670b8fe102110 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-06-02T14:39:58Z (GMT) No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 101261rna078444120.pdf: 959775 bytes, checksum: 576764c23c716022a53670b8fe102110 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-06-02T15:17:45Z (GMT). No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 101261rna078444120.pdf: 959775 bytes, checksum: 576764c23c716022a53670b8fe102110 (MD5) Previous issue date: 2021ANII: FCE_3_2018_1_ 148745ANII: FSS_X_2018_1_1490709 happlication/pdfenengRNA SocietyRNA, 2021, 27(4): 403-410.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0)PIWI proteinsPiwi-interacting RNAsCancer piRNAsSomatic piRNAspiRNA databasesCirculating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancerArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaTosar Rovira, Juan PabloGarcía Silva, María RosaCayota, AlfonsoLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/37390/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; charset=utf-847http://localhost:8080/xmlui/bitstream/20.500.12008/37390/2/license_url966d4a1cc97b2c4389b5142dd97d3c7fMD52license_textlicense_texttext/html; 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- Universidad de la Repúblicafalse
spellingShingle Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
Tosar Rovira, Juan Pablo
PIWI proteins
Piwi-interacting RNAs
Cancer piRNAs
Somatic piRNAs
piRNA databases
status_str publishedVersion
title Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
title_full Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
title_fullStr Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
title_full_unstemmed Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
title_short Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
title_sort Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer
topic PIWI proteins
Piwi-interacting RNAs
Cancer piRNAs
Somatic piRNAs
piRNA databases
url https://hdl.handle.net/20.500.12008/37390