Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs
Resumen:
We have previously shown that 5 halves from tRNA Gly GCC and tRNA Glu CUC are the most enriched small RNAs in the extracellular space of human cell lines, and especially in the non-vesicular fraction. Extracellular RNAs are believed to require protection by either encapsulation in vesicles or ribonucleoprotein complex formation. However, deproteinization of non-vesicular tRNA halves does not affect their retention in size-exclusion chromatography. Thus, we considered alternative explanations for their extracellular stability. In-silico analysis of the sequence of these tRNA-derived fragments showed that tRNA Gly 5 halves can form homodimers or heterodimers with tRNA Glu 5 halves. This capacity is virtually unique to glycine tRNAs. By analyzing synthetic oligonucleotides by size exclusion chromatography, we provide evidence that dimerization is possible in vitro. tRNA halves with single point substitutions preventing dimerization are degraded faster both in controlled nuclease digestion assays and after transfection in cells, showing that dimerization can stabilize tRNA halves against the action of cellular nucleases. Finally, we give evidence supporting dimerization of endogenous tRNA Gly GCC 5 halves inside cells. Considering recent reports have shown that 5 tRNA halves from Ala and Cys can form tetramers, our results highlight RNA intermolecular structures as a new layer of complexity in the biology of tRNA-derived fragments.
2018 | |
Amino Acyl-tRNA Synthetases RNA, Transfer Genetic code |
|
Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/22059 | |
Acceso abierto | |
Licencia Creative Commons Atribución – No Comercial (CC-BY-NC- 4.0) |
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author | Tosar Rovira, Juan Pablo |
author2 | Gámbaro, Fabiana Darré, Leonardo Pantano, Sergio Westhof, E. Cayota, Alfonso |
author2_role | author author author author author |
author_facet | Tosar Rovira, Juan Pablo Gámbaro, Fabiana Darré, Leonardo Pantano, Sergio Westhof, E. Cayota, Alfonso |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.es.fl_str_mv | Tosar Rovira, Juan Pablo. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Investigaciones Nucleares Gámbaro, Fabiana. Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones Nucleares Darré, Leonardo. Instituto Pasteur (Montevideo) Pantano, Sergio. Instituto Pasteur (Montevideo) Cayota, Alfonso. Instituto Pasteur (Montevideo) |
dc.creator.none.fl_str_mv | Tosar Rovira, Juan Pablo Gámbaro, Fabiana Darré, Leonardo Pantano, Sergio Westhof, E. Cayota, Alfonso |
dc.date.accessioned.none.fl_str_mv | 2019-10-02T22:12:07Z |
dc.date.available.none.fl_str_mv | 2019-10-02T22:12:07Z |
dc.date.issued.es.fl_str_mv | 2018 |
dc.date.submitted.es.fl_str_mv | 20190930 |
dc.description.abstract.none.fl_txt_mv | We have previously shown that 5 halves from tRNA Gly GCC and tRNA Glu CUC are the most enriched small RNAs in the extracellular space of human cell lines, and especially in the non-vesicular fraction. Extracellular RNAs are believed to require protection by either encapsulation in vesicles or ribonucleoprotein complex formation. However, deproteinization of non-vesicular tRNA halves does not affect their retention in size-exclusion chromatography. Thus, we considered alternative explanations for their extracellular stability. In-silico analysis of the sequence of these tRNA-derived fragments showed that tRNA Gly 5 halves can form homodimers or heterodimers with tRNA Glu 5 halves. This capacity is virtually unique to glycine tRNAs. By analyzing synthetic oligonucleotides by size exclusion chromatography, we provide evidence that dimerization is possible in vitro. tRNA halves with single point substitutions preventing dimerization are degraded faster both in controlled nuclease digestion assays and after transfection in cells, showing that dimerization can stabilize tRNA halves against the action of cellular nucleases. Finally, we give evidence supporting dimerization of endogenous tRNA Gly GCC 5 halves inside cells. Considering recent reports have shown that 5 tRNA halves from Ala and Cys can form tetramers, our results highlight RNA intermolecular structures as a new layer of complexity in the biology of tRNA-derived fragments. |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Tosar., J.P., et al. Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs. Nucleic Acids Research, 2018, 46 (17): 9081-9093. doi: 10.1093/nar/gky495 |
dc.identifier.doi.es.fl_str_mv | 10.1093/nar/gky495 |
dc.identifier.issn.es.fl_str_mv | 0305-1048 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/22059 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | Oxford University Press |
dc.relation.ispartof.es.fl_str_mv | Nucleic Acids Research, 2018, 46 (17): 9081-9093 |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución – No Comercial (CC-BY-NC- 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Amino Acyl-tRNA Synthetases RNA, Transfer Genetic code |
dc.title.none.fl_str_mv | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | We have previously shown that 5 halves from tRNA Gly GCC and tRNA Glu CUC are the most enriched small RNAs in the extracellular space of human cell lines, and especially in the non-vesicular fraction. Extracellular RNAs are believed to require protection by either encapsulation in vesicles or ribonucleoprotein complex formation. However, deproteinization of non-vesicular tRNA halves does not affect their retention in size-exclusion chromatography. Thus, we considered alternative explanations for their extracellular stability. In-silico analysis of the sequence of these tRNA-derived fragments showed that tRNA Gly 5 halves can form homodimers or heterodimers with tRNA Glu 5 halves. This capacity is virtually unique to glycine tRNAs. By analyzing synthetic oligonucleotides by size exclusion chromatography, we provide evidence that dimerization is possible in vitro. tRNA halves with single point substitutions preventing dimerization are degraded faster both in controlled nuclease digestion assays and after transfection in cells, showing that dimerization can stabilize tRNA halves against the action of cellular nucleases. Finally, we give evidence supporting dimerization of endogenous tRNA Gly GCC 5 halves inside cells. Considering recent reports have shown that 5 tRNA halves from Ala and Cys can form tetramers, our results highlight RNA intermolecular structures as a new layer of complexity in the biology of tRNA-derived fragments. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_c090a7e35705a98bf374ba5df2929490 |
identifier_str_mv | Tosar., J.P., et al. Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs. Nucleic Acids Research, 2018, 46 (17): 9081-9093. doi: 10.1093/nar/gky495 0305-1048 10.1093/nar/gky495 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/22059 |
publishDate | 2018 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución – No Comercial (CC-BY-NC- 4.0) |
spelling | Tosar Rovira, Juan Pablo. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Investigaciones NuclearesGámbaro, Fabiana. Universidad de la República (Uruguay). Facultad de Ciencias. Centro de Investigaciones NuclearesDarré, Leonardo. Instituto Pasteur (Montevideo)Pantano, Sergio. Instituto Pasteur (Montevideo)Cayota, Alfonso. Instituto Pasteur (Montevideo)2019-10-02T22:12:07Z2019-10-02T22:12:07Z201820190930Tosar., J.P., et al. Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs. Nucleic Acids Research, 2018, 46 (17): 9081-9093. doi: 10.1093/nar/gky4950305-1048https://hdl.handle.net/20.500.12008/2205910.1093/nar/gky495We have previously shown that 5 halves from tRNA Gly GCC and tRNA Glu CUC are the most enriched small RNAs in the extracellular space of human cell lines, and especially in the non-vesicular fraction. Extracellular RNAs are believed to require protection by either encapsulation in vesicles or ribonucleoprotein complex formation. However, deproteinization of non-vesicular tRNA halves does not affect their retention in size-exclusion chromatography. Thus, we considered alternative explanations for their extracellular stability. In-silico analysis of the sequence of these tRNA-derived fragments showed that tRNA Gly 5 halves can form homodimers or heterodimers with tRNA Glu 5 halves. This capacity is virtually unique to glycine tRNAs. By analyzing synthetic oligonucleotides by size exclusion chromatography, we provide evidence that dimerization is possible in vitro. tRNA halves with single point substitutions preventing dimerization are degraded faster both in controlled nuclease digestion assays and after transfection in cells, showing that dimerization can stabilize tRNA halves against the action of cellular nucleases. Finally, we give evidence supporting dimerization of endogenous tRNA Gly GCC 5 halves inside cells. Considering recent reports have shown that 5 tRNA halves from Ala and Cys can form tetramers, our results highlight RNA intermolecular structures as a new layer of complexity in the biology of tRNA-derived fragments.Made available in DSpace on 2019-10-02T22:12:07Z (GMT). No. of bitstreams: 5 101093nargky495.pdf: 5892050 bytes, checksum: b2f71661280cb70a7eb7e6317348c90a (MD5) license_text: 38300 bytes, checksum: 098d76773c7b7afafb04cabc04ea8a56 (MD5) license_url: 47 bytes, checksum: 966d4a1cc97b2c4389b5142dd97d3c7f (MD5) license_rdf: 9754 bytes, checksum: ffcba5f515f45166c8d3bb6aa02e3123 (MD5) license.txt: 4194 bytes, checksum: 7f2e2c17ef6585de66da58d1bfa8b5e1 (MD5) Previous issue date: 2018application/pdfenengOxford University PressNucleic Acids Research, 2018, 46 (17): 9081-9093Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad De La República. (Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución – No Comercial (CC-BY-NC- 4.0)Amino Acyl-tRNA SynthetasesRNA, TransferGenetic codeDimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaTosar Rovira, Juan PabloGámbaro, FabianaDarré, LeonardoPantano, SergioWesthof, E.Cayota, 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- Universidad de la Repúblicafalse |
spellingShingle | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs Tosar Rovira, Juan Pablo Amino Acyl-tRNA Synthetases RNA, Transfer Genetic code |
status_str | publishedVersion |
title | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
title_full | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
title_fullStr | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
title_full_unstemmed | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
title_short | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
title_sort | Dimerization confers increased stability to nucleases in 5 halves from glycine and glutamic acid tRNAs |
topic | Amino Acyl-tRNA Synthetases RNA, Transfer Genetic code |
url | https://hdl.handle.net/20.500.12008/22059 |