An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
Resumen:
Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer.
2018 | |
Cancer Clinical outcome DNA Methylation Hsa-miR-130b Hsa-miR-301b Microarray MiRNA Prostate TCGA Transcriptome |
|
Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/22088 | |
Acceso abierto | |
Licencia Creative Commons Atribución (CC –BY 4.0) |
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author | Fort Canobra, Rafael S |
author2 | Mathó, Cecilia Oliveira-Rizzo, Carolina Garat, Beatriz Sotelo Silveira, José Roberto Duhagon, María Ana |
author2_role | author author author author author |
author_facet | Fort Canobra, Rafael S Mathó, Cecilia Oliveira-Rizzo, Carolina Garat, Beatriz Sotelo Silveira, José Roberto Duhagon, María Ana |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.es.fl_str_mv | Fort Canobra, Rafael S. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica Mathó, Cecilia. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica Oliveira-Rizzo, Carolina. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología Garat, Beatríz. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología Sotelo Silveira, José Roberto. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología Duhagon, María Ana. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología |
dc.creator.none.fl_str_mv | Fort Canobra, Rafael S Mathó, Cecilia Oliveira-Rizzo, Carolina Garat, Beatriz Sotelo Silveira, José Roberto Duhagon, María Ana |
dc.date.accessioned.none.fl_str_mv | 2019-10-02T22:14:49Z |
dc.date.available.none.fl_str_mv | 2019-10-02T22:14:49Z |
dc.date.issued.es.fl_str_mv | 2018 |
dc.date.submitted.es.fl_str_mv | 20191001 |
dc.description.abstract.none.fl_txt_mv | Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer. |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Fort, R.S., [y otros]. "An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer". Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10. doi: 10.1186/s40164-018-0102-0 |
dc.identifier.doi.es.fl_str_mv | 10.1186/s40164-018-0102-0 |
dc.identifier.issn.es.fl_str_mv | 2162-3619 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/22088 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | BioMed Central Ltd. |
dc.relation.ispartof.es.fl_str_mv | Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10 |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC –BY 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Cancer Clinical outcome DNA Methylation Hsa-miR-130b Hsa-miR-301b Microarray MiRNA Prostate TCGA Transcriptome |
dc.title.none.fl_str_mv | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_bb65200f9c4321eb1b66cb8917d5da2a |
identifier_str_mv | Fort, R.S., [y otros]. "An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer". Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10. doi: 10.1186/s40164-018-0102-0 2162-3619 10.1186/s40164-018-0102-0 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/22088 |
publishDate | 2018 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución (CC –BY 4.0) |
spelling | Fort Canobra, Rafael S. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaMathó, Cecilia. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaOliveira-Rizzo, Carolina. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaGarat, Beatríz. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaSotelo Silveira, José Roberto. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaDuhagon, María Ana. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología2019-10-02T22:14:49Z2019-10-02T22:14:49Z201820191001Fort, R.S., [y otros]. "An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer". Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10. doi: 10.1186/s40164-018-0102-02162-3619https://hdl.handle.net/20.500.12008/2208810.1186/s40164-018-0102-0Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer.Made available in DSpace on 2019-10-02T22:14:49Z (GMT). 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Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC –BY 4.0)CancerClinical outcomeDNA MethylationHsa-miR-130bHsa-miR-301bMicroarrayMiRNAProstateTCGATranscriptomeAn integrated view of the role of miR-130b/301b miRNA cluster in prostate cancerArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFort Canobra, Rafael SMathó, CeciliaOliveira-Rizzo, CarolinaGarat, BeatrizSotelo Silveira, José RobertoDuhagon, María 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- Universidad de la Repúblicafalse |
spellingShingle | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer Fort Canobra, Rafael S Cancer Clinical outcome DNA Methylation Hsa-miR-130b Hsa-miR-301b Microarray MiRNA Prostate TCGA Transcriptome |
status_str | publishedVersion |
title | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
title_full | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
title_fullStr | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
title_full_unstemmed | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
title_short | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
title_sort | An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer |
topic | Cancer Clinical outcome DNA Methylation Hsa-miR-130b Hsa-miR-301b Microarray MiRNA Prostate TCGA Transcriptome |
url | https://hdl.handle.net/20.500.12008/22088 |