An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer

Fort Canobra, Rafael S - Mathó, Cecilia - Oliveira-Rizzo, Carolina - Garat, Beatriz - Sotelo Silveira, José Roberto - Duhagon, María Ana

Resumen:

Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer.


Detalles Bibliográficos
2018
Cancer
Clinical outcome
DNA Methylation
Hsa-miR-130b
Hsa-miR-301b
Microarray
MiRNA
Prostate
TCGA
Transcriptome
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/22088
Acceso abierto
Licencia Creative Commons Atribución (CC –BY 4.0)
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author Fort Canobra, Rafael S
author2 Mathó, Cecilia
Oliveira-Rizzo, Carolina
Garat, Beatriz
Sotelo Silveira, José Roberto
Duhagon, María Ana
author2_role author
author
author
author
author
author_facet Fort Canobra, Rafael S
Mathó, Cecilia
Oliveira-Rizzo, Carolina
Garat, Beatriz
Sotelo Silveira, José Roberto
Duhagon, María Ana
author_role author
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dc.contributor.filiacion.es.fl_str_mv Fort Canobra, Rafael S. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica
Mathó, Cecilia. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica
Oliveira-Rizzo, Carolina. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
Garat, Beatríz. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
Sotelo Silveira, José Roberto. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
Duhagon, María Ana. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
dc.creator.none.fl_str_mv Fort Canobra, Rafael S
Mathó, Cecilia
Oliveira-Rizzo, Carolina
Garat, Beatriz
Sotelo Silveira, José Roberto
Duhagon, María Ana
dc.date.accessioned.none.fl_str_mv 2019-10-02T22:14:49Z
dc.date.available.none.fl_str_mv 2019-10-02T22:14:49Z
dc.date.issued.es.fl_str_mv 2018
dc.date.submitted.es.fl_str_mv 20191001
dc.description.abstract.none.fl_txt_mv Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer.
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dc.identifier.citation.es.fl_str_mv Fort, R.S., [y otros]. "An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer". Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10. doi: 10.1186/s40164-018-0102-0
dc.identifier.doi.es.fl_str_mv 10.1186/s40164-018-0102-0
dc.identifier.issn.es.fl_str_mv 2162-3619
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/22088
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv BioMed Central Ltd.
dc.relation.ispartof.es.fl_str_mv Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC –BY 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Cancer
Clinical outcome
DNA Methylation
Hsa-miR-130b
Hsa-miR-301b
Microarray
MiRNA
Prostate
TCGA
Transcriptome
dc.title.none.fl_str_mv An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer.
eu_rights_str_mv openAccess
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identifier_str_mv Fort, R.S., [y otros]. "An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer". Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10. doi: 10.1186/s40164-018-0102-0
2162-3619
10.1186/s40164-018-0102-0
instacron_str Universidad de la República
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instname_str Universidad de la República
language eng
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publishDate 2018
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
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rights_invalid_str_mv Licencia Creative Commons Atribución (CC –BY 4.0)
spelling Fort Canobra, Rafael S. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaMathó, Cecilia. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaOliveira-Rizzo, Carolina. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaGarat, Beatríz. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaSotelo Silveira, José Roberto. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaDuhagon, María Ana. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología2019-10-02T22:14:49Z2019-10-02T22:14:49Z201820191001Fort, R.S., [y otros]. "An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer". Experimental Hematology and Oncology, 2018, 7 (1), art. no. 10. doi: 10.1186/s40164-018-0102-02162-3619https://hdl.handle.net/20.500.12008/2208810.1186/s40164-018-0102-0Prostate cancer is a major health problem worldwide due to its high incidence morbidity and mortality. There is currently a need of improved biomarkers, capable to distinguish mild versus aggressive forms of the disease, and thus guide therapeutic decisions. Although miRNAs deregulated in cancer represent exciting candidates as biomarkers, its scientific literature is frequently fragmented in dispersed studies. This problem is aggravated for miRNAs belonging to miRNA gene clusters with shared target genes. The miRNA cluster composed by hsa-mir-130b and hsa-mir-301b precursors was recently involved in prostate cancer pathogenesis, yet different studies assigned it opposite effects on the disease. We sought to elucidate the role of the human miR-130b/301b miRNA cluster in prostate cancer through a comprehensive data analysis of most published clinical cohorts. We interrogated methylomes, transcriptomes and patient clinical data, unifying previous reports and adding original analysis using the largest available cohort (TCGA-PRAD). We found that hsa-miR-130b-3p and hsa-miR-301b-3p are upregulated in neoplastic vs normal prostate tissue, as well as in metastatic vs primary sites. However, this increase in expression is not due to a decrease of the global DNA methylation of the genes in prostate tissues, as the promoter of the gene remains lowly methylated in normal and neoplastic tissue. A comparison of the levels of human miR-130b/301b and all the clinical variables reported for the major available cohorts, yielded positive correlations with malignance, specifically significant for T-stage, residual tumor status and primary therapy outcome. The assessment of the correlations between the hsa-miR-130b-3p and hsa-miR-301b-3p and candidate target genes in clinical samples, supports their repression of tumor suppressor genes in prostate cancer. Altogether, these results favor an oncogenic role of miR-130b/301b cluster in prostate cancer.Made available in DSpace on 2019-10-02T22:14:49Z (GMT). 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Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC –BY 4.0)CancerClinical outcomeDNA MethylationHsa-miR-130bHsa-miR-301bMicroarrayMiRNAProstateTCGATranscriptomeAn integrated view of the role of miR-130b/301b miRNA cluster in prostate cancerArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFort Canobra, Rafael SMathó, CeciliaOliveira-Rizzo, CarolinaGarat, BeatrizSotelo Silveira, José RobertoDuhagon, María 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- Universidad de la Repúblicafalse
spellingShingle An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
Fort Canobra, Rafael S
Cancer
Clinical outcome
DNA Methylation
Hsa-miR-130b
Hsa-miR-301b
Microarray
MiRNA
Prostate
TCGA
Transcriptome
status_str publishedVersion
title An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
title_full An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
title_fullStr An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
title_full_unstemmed An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
title_short An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
title_sort An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer
topic Cancer
Clinical outcome
DNA Methylation
Hsa-miR-130b
Hsa-miR-301b
Microarray
MiRNA
Prostate
TCGA
Transcriptome
url https://hdl.handle.net/20.500.12008/22088