Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)

Larghero Valdivia, Irene - Fernández Calero, Tamara - Barbot, Catalina - Portela, María Magdalena - Costa, Fabrizzio - Perelmuter, Karen - Bollati-Fogolín, Mariela - Durán, Rosario - Marín Gutiérrez, Mónica - Ehrlich, Ricardo - Fåhraeus, Robin - López Ferreira, Luis Ignacio

Resumen:

The tumor suppressor protein p53 is a central factor that contributes to cell homeostasis as it regulates expression of many genes associated with normal cellular processes such as cell cycle, proliferation, apoptosis, senescence, autophagy and metabolism, among others. Most of the known regulation exerted by p53 occurs at the transcription level, which is supported by its well characterized DNA-binding and trans-activation domains that are altered by many cancer-associated p53 mutations. In addition, p53 is involved in cellular responses to various types of stress, among which DNA damage, oncogene activation and ribosomal stress are the most studied. However, recent studies have proposed that p53 also plays a role in coordinating post-transcriptional regulatory mechanisms during unfolded protein response (UPR). The UPR is activated when misfolded or unfolded proteins accumulate in the lumen of the endoplasmic reticulum (ER), and although its main purpose is to restore the proteostasis of normal cells that produce large amounts of proteins, it has been found altered in pathologies such as cancer, diabetes, and neurodegenerative diseases. In order to elucidate the possible regulatory mechanisms mediated by p53, we have analyzed the transcriptome and proteome of p53-null human H1299 cells under ER stress conditions both in presence and absence of p53. The results show that p53 activity is required to elicit a fully operational UPR and that, unlike what occurs in other conditions, it promotes a marked inhibition of gene expression, both at the mRNA and protein levels. Moreover, many proteins down-regulated during the UPR in a p53-dependent manner show no difference in mRNA abundance suggesting that post-transcriptional mechanisms are particularly relevant during the UPR and are the current focus of our work.


Detalles Bibliográficos
2023
ANII: FCE_3_2020_1_161877.
p53
UPR
Transcriptoma
Proteoma
Regulación post-transcripcional
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/41655
Acceso abierto
Licencia Creative Commons Atribución - No Comercial - Compartir Igual (CC - By-NC-SA 4.0)
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author Larghero Valdivia, Irene
author2 Fernández Calero, Tamara
Barbot, Catalina
Portela, María Magdalena
Costa, Fabrizzio
Perelmuter, Karen
Bollati-Fogolín, Mariela
Durán, Rosario
Marín Gutiérrez, Mónica
Ehrlich, Ricardo
Fåhraeus, Robin
López Ferreira, Luis Ignacio
author2_role author
author
author
author
author
author
author
author
author
author
author
author_facet Larghero Valdivia, Irene
Fernández Calero, Tamara
Barbot, Catalina
Portela, María Magdalena
Costa, Fabrizzio
Perelmuter, Karen
Bollati-Fogolín, Mariela
Durán, Rosario
Marín Gutiérrez, Mónica
Ehrlich, Ricardo
Fåhraeus, Robin
López Ferreira, Luis Ignacio
author_role author
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dc.contributor.filiacion.none.fl_str_mv Larghero Valdivia Irene, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Fernández Calero Tamara, Instituto Pasteur (Montevideo).
Barbot Catalina, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Portela María Magdalena, Instituto Pasteur (Montevideo).
Costa Fabrizzio, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Perelmuter Karen, Instituto Pasteur (Montevideo).
Bollati-Fogolín Mariela, Instituto Pasteur (Montevideo).
Durán Rosario, Instituto Pasteur (Montevideo).
Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Ehrlich Ricardo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
Fåhraeus Robin
López Ferreira Luis Ignacio, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.
dc.creator.none.fl_str_mv Larghero Valdivia, Irene
Fernández Calero, Tamara
Barbot, Catalina
Portela, María Magdalena
Costa, Fabrizzio
Perelmuter, Karen
Bollati-Fogolín, Mariela
Durán, Rosario
Marín Gutiérrez, Mónica
Ehrlich, Ricardo
Fåhraeus, Robin
López Ferreira, Luis Ignacio
dc.date.accessioned.none.fl_str_mv 2023-12-04T15:40:18Z
dc.date.available.none.fl_str_mv 2023-12-04T15:40:18Z
dc.date.issued.none.fl_str_mv 2023
dc.description.abstract.none.fl_txt_mv The tumor suppressor protein p53 is a central factor that contributes to cell homeostasis as it regulates expression of many genes associated with normal cellular processes such as cell cycle, proliferation, apoptosis, senescence, autophagy and metabolism, among others. Most of the known regulation exerted by p53 occurs at the transcription level, which is supported by its well characterized DNA-binding and trans-activation domains that are altered by many cancer-associated p53 mutations. In addition, p53 is involved in cellular responses to various types of stress, among which DNA damage, oncogene activation and ribosomal stress are the most studied. However, recent studies have proposed that p53 also plays a role in coordinating post-transcriptional regulatory mechanisms during unfolded protein response (UPR). The UPR is activated when misfolded or unfolded proteins accumulate in the lumen of the endoplasmic reticulum (ER), and although its main purpose is to restore the proteostasis of normal cells that produce large amounts of proteins, it has been found altered in pathologies such as cancer, diabetes, and neurodegenerative diseases. In order to elucidate the possible regulatory mechanisms mediated by p53, we have analyzed the transcriptome and proteome of p53-null human H1299 cells under ER stress conditions both in presence and absence of p53. The results show that p53 activity is required to elicit a fully operational UPR and that, unlike what occurs in other conditions, it promotes a marked inhibition of gene expression, both at the mRNA and protein levels. Moreover, many proteins down-regulated during the UPR in a p53-dependent manner show no difference in mRNA abundance suggesting that post-transcriptional mechanisms are particularly relevant during the UPR and are the current focus of our work.
dc.description.sponsorship.none.fl_txt_mv ANII: FCE_3_2020_1_161877.
dc.format.extent.es.fl_str_mv 1 h
dc.format.mimetype.es.fl_str_mv application/pdf
dc.identifier.citation.es.fl_str_mv Larghero Valdivia, I, Fernández Calero, T, Barbot, C, [ y otros autores]. Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR) [en línea] EN: Congreso: 3rd. Molecular Biosystems Conference on Eukaryotic Gene Regulation & Functional Genomics, Sep 25-29, 2023. Puerto Varas : Sociedad de Bioquímica y Biología Molecular de Chile, 2023. 1 h
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/41655
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv Sociedad de Bioquímica y Biología Molecular de Chile
dc.relation.ispartof.es.fl_str_mv Congreso: 3rd. Molecular Biosystems Conference on Eukaryotic Gene Regulation & Functional Genomics, Sep 25-29, 2023. Puerto Varas, Chile.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución - No Comercial - Compartir Igual (CC - By-NC-SA 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv p53
UPR
Transcriptoma
Proteoma
Regulación post-transcripcional
dc.title.none.fl_str_mv Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
dc.type.es.fl_str_mv Ponencia
dc.type.none.fl_str_mv info:eu-repo/semantics/conferenceObject
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description The tumor suppressor protein p53 is a central factor that contributes to cell homeostasis as it regulates expression of many genes associated with normal cellular processes such as cell cycle, proliferation, apoptosis, senescence, autophagy and metabolism, among others. Most of the known regulation exerted by p53 occurs at the transcription level, which is supported by its well characterized DNA-binding and trans-activation domains that are altered by many cancer-associated p53 mutations. In addition, p53 is involved in cellular responses to various types of stress, among which DNA damage, oncogene activation and ribosomal stress are the most studied. However, recent studies have proposed that p53 also plays a role in coordinating post-transcriptional regulatory mechanisms during unfolded protein response (UPR). The UPR is activated when misfolded or unfolded proteins accumulate in the lumen of the endoplasmic reticulum (ER), and although its main purpose is to restore the proteostasis of normal cells that produce large amounts of proteins, it has been found altered in pathologies such as cancer, diabetes, and neurodegenerative diseases. In order to elucidate the possible regulatory mechanisms mediated by p53, we have analyzed the transcriptome and proteome of p53-null human H1299 cells under ER stress conditions both in presence and absence of p53. The results show that p53 activity is required to elicit a fully operational UPR and that, unlike what occurs in other conditions, it promotes a marked inhibition of gene expression, both at the mRNA and protein levels. Moreover, many proteins down-regulated during the UPR in a p53-dependent manner show no difference in mRNA abundance suggesting that post-transcriptional mechanisms are particularly relevant during the UPR and are the current focus of our work.
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identifier_str_mv Larghero Valdivia, I, Fernández Calero, T, Barbot, C, [ y otros autores]. Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR) [en línea] EN: Congreso: 3rd. Molecular Biosystems Conference on Eukaryotic Gene Regulation & Functional Genomics, Sep 25-29, 2023. Puerto Varas : Sociedad de Bioquímica y Biología Molecular de Chile, 2023. 1 h
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publishDate 2023
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repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
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rights_invalid_str_mv Licencia Creative Commons Atribución - No Comercial - Compartir Igual (CC - By-NC-SA 4.0)
spelling Larghero Valdivia Irene, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Fernández Calero Tamara, Instituto Pasteur (Montevideo).Barbot Catalina, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Portela María Magdalena, Instituto Pasteur (Montevideo).Costa Fabrizzio, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Perelmuter Karen, Instituto Pasteur (Montevideo).Bollati-Fogolín Mariela, Instituto Pasteur (Montevideo).Durán Rosario, Instituto Pasteur (Montevideo).Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Ehrlich Ricardo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Fåhraeus RobinLópez Ferreira Luis Ignacio, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.2023-12-04T15:40:18Z2023-12-04T15:40:18Z2023Larghero Valdivia, I, Fernández Calero, T, Barbot, C, [ y otros autores]. Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR) [en línea] EN: Congreso: 3rd. Molecular Biosystems Conference on Eukaryotic Gene Regulation & Functional Genomics, Sep 25-29, 2023. Puerto Varas : Sociedad de Bioquímica y Biología Molecular de Chile, 2023. 1 hhttps://hdl.handle.net/20.500.12008/41655The tumor suppressor protein p53 is a central factor that contributes to cell homeostasis as it regulates expression of many genes associated with normal cellular processes such as cell cycle, proliferation, apoptosis, senescence, autophagy and metabolism, among others. Most of the known regulation exerted by p53 occurs at the transcription level, which is supported by its well characterized DNA-binding and trans-activation domains that are altered by many cancer-associated p53 mutations. In addition, p53 is involved in cellular responses to various types of stress, among which DNA damage, oncogene activation and ribosomal stress are the most studied. However, recent studies have proposed that p53 also plays a role in coordinating post-transcriptional regulatory mechanisms during unfolded protein response (UPR). The UPR is activated when misfolded or unfolded proteins accumulate in the lumen of the endoplasmic reticulum (ER), and although its main purpose is to restore the proteostasis of normal cells that produce large amounts of proteins, it has been found altered in pathologies such as cancer, diabetes, and neurodegenerative diseases. In order to elucidate the possible regulatory mechanisms mediated by p53, we have analyzed the transcriptome and proteome of p53-null human H1299 cells under ER stress conditions both in presence and absence of p53. The results show that p53 activity is required to elicit a fully operational UPR and that, unlike what occurs in other conditions, it promotes a marked inhibition of gene expression, both at the mRNA and protein levels. Moreover, many proteins down-regulated during the UPR in a p53-dependent manner show no difference in mRNA abundance suggesting that post-transcriptional mechanisms are particularly relevant during the UPR and are the current focus of our work.Submitted by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-12-04T15:14:24Z No. of bitstreams: 2 license_rdf: 26308 bytes, checksum: 27d85011139cdc22b845da52c980f01f (MD5) 4_Larghero_mBio_23.pdf: 54168 bytes, checksum: 7d5f63a6bd400885b2ccecd20af65bd3 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-12-04T15:14:45Z (GMT) No. of bitstreams: 2 license_rdf: 26308 bytes, checksum: 27d85011139cdc22b845da52c980f01f (MD5) 4_Larghero_mBio_23.pdf: 54168 bytes, checksum: 7d5f63a6bd400885b2ccecd20af65bd3 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-12-04T15:40:18Z (GMT). No. of bitstreams: 2 license_rdf: 26308 bytes, checksum: 27d85011139cdc22b845da52c980f01f (MD5) 4_Larghero_mBio_23.pdf: 54168 bytes, checksum: 7d5f63a6bd400885b2ccecd20af65bd3 (MD5) Previous issue date: 2023ANII: FCE_3_2020_1_161877.1 happlication/pdfenengSociedad de Bioquímica y Biología Molecular de ChileCongreso: 3rd. Molecular Biosystems Conference on Eukaryotic Gene Regulation & Functional Genomics, Sep 25-29, 2023. Puerto Varas, Chile.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución - No Comercial - Compartir Igual (CC - By-NC-SA 4.0)p53UPRTranscriptomaProteomaRegulación post-transcripcionalDeciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)Ponenciainfo:eu-repo/semantics/conferenceObjectinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaLarghero Valdivia, IreneFernández Calero, TamaraBarbot, CatalinaPortela, María MagdalenaCosta, FabrizzioPerelmuter, KarenBollati-Fogolín, MarielaDurán, RosarioMarín Gutiérrez, MónicaEhrlich, RicardoFåhraeus, RobinLópez Ferreira, Luis IgnacioLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/41655/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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- Universidad de la Repúblicafalse
spellingShingle Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
Larghero Valdivia, Irene
p53
UPR
Transcriptoma
Proteoma
Regulación post-transcripcional
status_str publishedVersion
title Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
title_full Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
title_fullStr Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
title_full_unstemmed Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
title_short Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
title_sort Deciphering post-transcriptional regulation mechanism mediated by p53 during the unfolded protein response (UPR)
topic p53
UPR
Transcriptoma
Proteoma
Regulación post-transcripcional
url https://hdl.handle.net/20.500.12008/41655