Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections

Robino, Luciana - Navarro, Nicolás - Canales-Huerta, Nicole - González, María José - Cruz, Erlen - Sauto, Rafael - Morales, Cecilia - Neffa, Florencia - Zeballos, Javier - Jessen, Gerdhard L. - Zunino, Pablo - Scavone, Paola

Resumen:

The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease.

Detalles Bibliográficos
2025
Agencia Nacional de Investigación e Innovación (ANII)
urinary microbiome
EQUC
intracellular bacterial communites
urinary tract infection
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/54307
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Robino, Luciana
author2 Navarro, Nicolás
Canales-Huerta, Nicole
González, María José
Cruz, Erlen
Sauto, Rafael
Morales, Cecilia
Neffa, Florencia
Zeballos, Javier
Jessen, Gerdhard L.
Zunino, Pablo
Scavone, Paola
author2_role author
author
author
author
author
author
author
author
author
author
author
author_facet Robino, Luciana
Navarro, Nicolás
Canales-Huerta, Nicole
González, María José
Cruz, Erlen
Sauto, Rafael
Morales, Cecilia
Neffa, Florencia
Zeballos, Javier
Jessen, Gerdhard L.
Zunino, Pablo
Scavone, Paola
author_role author
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dc.contributor.filiacion.none.fl_str_mv Robino Luciana, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y Virología
Navarro Nicolás, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos
Canales-Huerta Nicole, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos
González María José, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos
Cruz Erlen, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos
Sauto Rafael, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y Virología
Morales Cecilia, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y Virología
Neffa Florencia, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de Urología
Zeballos Javier, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de Urología
Jessen Gerdhard L., Universidad Austral de Chile (Chile). Instituto de Ciencias Marinas y Limnológicas
Zunino Pablo, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología
Scavone Paola, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos
dc.creator.none.fl_str_mv Robino, Luciana
Navarro, Nicolás
Canales-Huerta, Nicole
González, María José
Cruz, Erlen
Sauto, Rafael
Morales, Cecilia
Neffa, Florencia
Zeballos, Javier
Jessen, Gerdhard L.
Zunino, Pablo
Scavone, Paola
dc.date.accessioned.none.fl_str_mv 2026-04-13T15:46:08Z
dc.date.available.none.fl_str_mv 2026-04-13T15:46:08Z
dc.date.issued.none.fl_str_mv 2025
dc.description.abstract.none.fl_txt_mv The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease.
dc.description.sponsorship.none.fl_txt_mv Agencia Nacional de Investigación e Innovación (ANII)
dc.format.mimetype.es.fl_str_mv application/pdf
dc.identifier.citation.es.fl_str_mv ROBINO, L., NAVARRO, N., CANALES-HUERTA, N., y otros. Ucrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections. Microbiology Spectrum [en línea] 2025, 13(11). DOI: 10.1128/spectrum.01247-25
dc.identifier.doi.none.fl_str_mv 10.1128/spectrum.01247-25
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/54307
dc.language.iso.none.fl_str_mv en
eng
dc.relation.none.fl_str_mv Microbiology Spectrum. 13(11), 2025
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv urinary microbiome
EQUC
intracellular bacterial communites
urinary tract infection
dc.title.none.fl_str_mv Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease.
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identifier_str_mv ROBINO, L., NAVARRO, N., CANALES-HUERTA, N., y otros. Ucrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections. Microbiology Spectrum [en línea] 2025, 13(11). DOI: 10.1128/spectrum.01247-25
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spelling Robino Luciana, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y VirologíaNavarro Nicolás, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosCanales-Huerta Nicole, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosGonzález María José, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosCruz Erlen, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosSauto Rafael, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y VirologíaMorales Cecilia, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y VirologíaNeffa Florencia, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de UrologíaZeballos Javier, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de UrologíaJessen Gerdhard L., Universidad Austral de Chile (Chile). Instituto de Ciencias Marinas y LimnológicasZunino Pablo, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de MicrobiologíaScavone Paola, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos2026-04-13T15:46:08Z2026-04-13T15:46:08Z2025ROBINO, L., NAVARRO, N., CANALES-HUERTA, N., y otros. Ucrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections. Microbiology Spectrum [en línea] 2025, 13(11). DOI: 10.1128/spectrum.01247-25https://hdl.handle.net/20.500.12008/5430710.1128/spectrum.01247-25The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease.Submitted by Haller Mariana (mhaller@higiene.edu.uy) on 2026-04-10T16:53:25Z No. of bitstreams: 2 license_rdf: 25630 bytes, checksum: e7132498e7c1fe99f7096667baa99b25 (MD5) Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections.pdf: 4185638 bytes, checksum: 240b49699c9a6f8c1f9109cd3d70c930 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2026-04-13T15:46:08Z (GMT). No. of bitstreams: 2 license_rdf: 25630 bytes, checksum: e7132498e7c1fe99f7096667baa99b25 (MD5) Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections.pdf: 4185638 bytes, checksum: 240b49699c9a6f8c1f9109cd3d70c930 (MD5) Previous issue date: 2025Agencia Nacional de Investigación e Innovación (ANII)application/pdfenengMicrobiology Spectrum. 13(11), 2025Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)urinary microbiomeEQUCintracellular bacterial communitesurinary tract infectionUrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infectionsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaRobino, LucianaNavarro, NicolásCanales-Huerta, NicoleGonzález, María JoséCruz, ErlenSauto, RafaelMorales, CeciliaNeffa, FlorenciaZeballos, JavierJessen, Gerdhard L.Zunino, PabloScavone, PaolaLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/54307/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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públicahttps://udelar.edu.uy/https://www.colibri.udelar.edu.uy/oai/requestkarina.camps@seciu.edu.uyUruguayopendoar:47712026-04-13T15:46:08COLIBRI - Universidad de la Repúblicafalse
spellingShingle Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
Robino, Luciana
urinary microbiome
EQUC
intracellular bacterial communites
urinary tract infection
status_str publishedVersion
title Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
title_full Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
title_fullStr Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
title_full_unstemmed Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
title_short Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
title_sort Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
topic urinary microbiome
EQUC
intracellular bacterial communites
urinary tract infection
url https://hdl.handle.net/20.500.12008/54307