Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections
Resumen:
The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease.
| 2025 | |
| Agencia Nacional de Investigación e Innovación (ANII) | |
|
urinary microbiome EQUC intracellular bacterial communites urinary tract infection |
|
| Inglés | |
| Universidad de la República | |
| COLIBRI | |
| https://hdl.handle.net/20.500.12008/54307 | |
| Acceso abierto | |
| Licencia Creative Commons Atribución (CC - By 4.0) |
| _version_ | 1872865333726937088 |
|---|---|
| author | Robino, Luciana |
| author2 | Navarro, Nicolás Canales-Huerta, Nicole González, María José Cruz, Erlen Sauto, Rafael Morales, Cecilia Neffa, Florencia Zeballos, Javier Jessen, Gerdhard L. Zunino, Pablo Scavone, Paola |
| author2_role | author author author author author author author author author author author |
| author_facet | Robino, Luciana Navarro, Nicolás Canales-Huerta, Nicole González, María José Cruz, Erlen Sauto, Rafael Morales, Cecilia Neffa, Florencia Zeballos, Javier Jessen, Gerdhard L. Zunino, Pablo Scavone, Paola |
| author_role | author |
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| collection | COLIBRI |
| dc.contributor.filiacion.none.fl_str_mv | Robino Luciana, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y Virología Navarro Nicolás, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos Canales-Huerta Nicole, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos González María José, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos Cruz Erlen, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos Sauto Rafael, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y Virología Morales Cecilia, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y Virología Neffa Florencia, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de Urología Zeballos Javier, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de Urología Jessen Gerdhard L., Universidad Austral de Chile (Chile). Instituto de Ciencias Marinas y Limnológicas Zunino Pablo, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología Scavone Paola, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos |
| dc.creator.none.fl_str_mv | Robino, Luciana Navarro, Nicolás Canales-Huerta, Nicole González, María José Cruz, Erlen Sauto, Rafael Morales, Cecilia Neffa, Florencia Zeballos, Javier Jessen, Gerdhard L. Zunino, Pablo Scavone, Paola |
| dc.date.accessioned.none.fl_str_mv | 2026-04-13T15:46:08Z |
| dc.date.available.none.fl_str_mv | 2026-04-13T15:46:08Z |
| dc.date.issued.none.fl_str_mv | 2025 |
| dc.description.abstract.none.fl_txt_mv | The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease. |
| dc.description.sponsorship.none.fl_txt_mv | Agencia Nacional de Investigación e Innovación (ANII) |
| dc.format.mimetype.es.fl_str_mv | application/pdf |
| dc.identifier.citation.es.fl_str_mv | ROBINO, L., NAVARRO, N., CANALES-HUERTA, N., y otros. Ucrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections. Microbiology Spectrum [en línea] 2025, 13(11). DOI: 10.1128/spectrum.01247-25 |
| dc.identifier.doi.none.fl_str_mv | 10.1128/spectrum.01247-25 |
| dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/54307 |
| dc.language.iso.none.fl_str_mv | en eng |
| dc.relation.none.fl_str_mv | Microbiology Spectrum. 13(11), 2025 |
| dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
| dc.subject.es.fl_str_mv | urinary microbiome EQUC intracellular bacterial communites urinary tract infection |
| dc.title.none.fl_str_mv | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| dc.type.es.fl_str_mv | Artículo |
| dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
| dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
| description | The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease. |
| eu_rights_str_mv | openAccess |
| format | article |
| id | COLIBRI_ad951d87fad4be9bae14708887d05398 |
| identifier_str_mv | ROBINO, L., NAVARRO, N., CANALES-HUERTA, N., y otros. Ucrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections. Microbiology Spectrum [en línea] 2025, 13(11). DOI: 10.1128/spectrum.01247-25 10.1128/spectrum.01247-25 |
| instacron_str | Universidad de la República |
| institution | Universidad de la República |
| instname_str | Universidad de la República |
| language | eng |
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| publishDate | 2025 |
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| repository.name.fl_str_mv | COLIBRI - Universidad de la República |
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| rights_invalid_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
| spelling | Robino Luciana, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y VirologíaNavarro Nicolás, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosCanales-Huerta Nicole, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosGonzález María José, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosCruz Erlen, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms MicrobianosSauto Rafael, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y VirologíaMorales Cecilia, Universidad de la República (Uruguay). Facultad de Medicina. Instituto de Higiene. Unidad Académica Bacteriología y VirologíaNeffa Florencia, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de UrologíaZeballos Javier, Administración de Servicios de Salud del Estado (ASSE) (Uruguay). Hospital Maciel. Servicio de UrologíaJessen Gerdhard L., Universidad Austral de Chile (Chile). Instituto de Ciencias Marinas y LimnológicasZunino Pablo, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de MicrobiologíaScavone Paola, Instituto de Investigaciones Biológicas Clemente Estable (Uruguay). Departamento de Microbiología. Laboratorio de Biofilms Microbianos2026-04-13T15:46:08Z2026-04-13T15:46:08Z2025ROBINO, L., NAVARRO, N., CANALES-HUERTA, N., y otros. Ucrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections. Microbiology Spectrum [en línea] 2025, 13(11). DOI: 10.1128/spectrum.01247-25https://hdl.handle.net/20.500.12008/5430710.1128/spectrum.01247-25The urinary tract was long considered a sterile environment, but recent studies have revealed the presence of diverse microbial communities in healthy individuals collectively known as the urinary microbiome or urobiome. Although the urobiome has been studied primarily in populations from North America, Europe, and Asia, little is known about its characteristics in Latin America. In this work, we conducted a descriptive analysis of the urobiome of 77 adults, 40 females, and 37 males with and without symptoms of urinary tract infections (UTI) from Uruguay using a strategy that includes expanded quantitative uroculture, 16S rRNA gene sequencing from urine, and intracellular bacterial community evaluation. The microbial profiles revealed a wide diversity in the bacterial community composition, including both Lactobacillus-domi nated and diverse non-Lactobacillus communities. Notably, several genera frequently associated with health or disease, such as Gardnerella, Staphylococcus, Streptococcus, and Escherichia, were detected in many samples. We also observed associations between community types and host factors, such as gender, presence of symptoms, and IBC. These findings contribute to expanding our understanding of the human urobiome and highlight the need to consider geographic and cultural diversities when characterizing microbial communities and their implications for health. IMPORTANCE The concept of a sterile urinary tract has been challenged by the discovery of complex microbial communities in urine samples from healthy individu als. Most existing studies on the urinary microbiome focus on populations in the Global North, resulting in limited data from Latin America. Here, we present the first study characterizing the urobiome of an adult Uruguayan population using 16S rRNA gene sequencing. By analyzing associations between bacterial community types and individual metadata, we provide insights into the diversity and structure of urinary microbiota in a previously understudied population. These results broaden the current understanding of the urobiome and emphasize the importance of including diverse populations in microbiome research to achieve a more comprehensive and representa tive view of microbial contributions to health and disease.Submitted by Haller Mariana (mhaller@higiene.edu.uy) on 2026-04-10T16:53:25Z No. of bitstreams: 2 license_rdf: 25630 bytes, checksum: e7132498e7c1fe99f7096667baa99b25 (MD5) Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections.pdf: 4185638 bytes, checksum: 240b49699c9a6f8c1f9109cd3d70c930 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2026-04-13T15:46:08Z (GMT). No. of bitstreams: 2 license_rdf: 25630 bytes, checksum: e7132498e7c1fe99f7096667baa99b25 (MD5) Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections.pdf: 4185638 bytes, checksum: 240b49699c9a6f8c1f9109cd3d70c930 (MD5) Previous issue date: 2025Agencia Nacional de Investigación e Innovación (ANII)application/pdfenengMicrobiology Spectrum. 13(11), 2025Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)urinary microbiomeEQUCintracellular bacterial communitesurinary tract infectionUrogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infectionsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaRobino, LucianaNavarro, NicolásCanales-Huerta, NicoleGonzález, María JoséCruz, ErlenSauto, RafaelMorales, CeciliaNeffa, FlorenciaZeballos, JavierJessen, Gerdhard L.Zunino, PabloScavone, PaolaLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/54307/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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públicahttps://udelar.edu.uy/https://www.colibri.udelar.edu.uy/oai/requestkarina.camps@seciu.edu.uyUruguayopendoar:47712026-04-13T15:46:08COLIBRI - Universidad de la Repúblicafalse |
| spellingShingle | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections Robino, Luciana urinary microbiome EQUC intracellular bacterial communites urinary tract infection |
| status_str | publishedVersion |
| title | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| title_full | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| title_fullStr | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| title_full_unstemmed | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| title_short | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| title_sort | Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections |
| topic | urinary microbiome EQUC intracellular bacterial communites urinary tract infection |
| url | https://hdl.handle.net/20.500.12008/54307 |