Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
Resumen:
Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation.
2023 | |
Elite strain Inoculant Draft genome |
|
Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/43178 | |
Acceso abierto | |
Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0) |
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---|---|
author | Berais Rubio, Andrés |
author2 | Morel, María A. Filippi, Carla V Reyno, Rafael Monza, Jorge |
author2_role | author author author author |
author_facet | Berais Rubio, Andrés Morel, María A. Filippi, Carla V Reyno, Rafael Monza, Jorge |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | Berais Rubio Andrés, Universidad de la República (Uruguay). Facultad de Agronomía. Morel María A., Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Ecología y Ciencias Ambientales. Filippi Carla V, Universidad de la República (Uruguay). Facultad de Agronomía. Reyno Rafael, INIA Monza Jorge, niversidad de la República (Uruguay). Facultad de Agronomía. |
dc.creator.none.fl_str_mv | Berais Rubio, Andrés Morel, María A. Filippi, Carla V Reyno, Rafael Monza, Jorge |
dc.date.accessioned.none.fl_str_mv | 2024-03-19T12:23:30Z |
dc.date.available.none.fl_str_mv | 2024-03-19T12:23:30Z |
dc.date.issued.none.fl_str_mv | 2023 |
dc.description.abstract.none.fl_txt_mv | Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation. |
dc.format.extent.es.fl_str_mv | 8 h. |
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dc.identifier.citation.es.fl_str_mv | Berais Rubio, A, Morel, M, Filippi, C [y otros autores]. "Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence". The Microbe. [en línea] 2023, 1: 100008. 8 h. DOI: 10.1016/j.microb.2023.100008. |
dc.identifier.doi.none.fl_str_mv | 10.1016/j.microb.2023.100008 |
dc.identifier.issn.none.fl_str_mv | 2950-1946 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/43178 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | Elsevier |
dc.relation.ispartof.es.fl_str_mv | The Microbe, 2023, 1: 100008. |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Elite strain Inoculant Draft genome |
dc.title.none.fl_str_mv | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_abf9a926550adff2b05f019add405d99 |
identifier_str_mv | Berais Rubio, A, Morel, M, Filippi, C [y otros autores]. "Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence". The Microbe. [en línea] 2023, 1: 100008. 8 h. DOI: 10.1016/j.microb.2023.100008. 2950-1946 10.1016/j.microb.2023.100008 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/43178 |
publishDate | 2023 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0) |
spelling | Berais Rubio Andrés, Universidad de la República (Uruguay). Facultad de Agronomía.Morel María A., Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Ecología y Ciencias Ambientales.Filippi Carla V, Universidad de la República (Uruguay). Facultad de Agronomía.Reyno Rafael, INIAMonza Jorge, niversidad de la República (Uruguay). Facultad de Agronomía.2024-03-19T12:23:30Z2024-03-19T12:23:30Z2023Berais Rubio, A, Morel, M, Filippi, C [y otros autores]. "Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence". The Microbe. [en línea] 2023, 1: 100008. 8 h. DOI: 10.1016/j.microb.2023.100008.2950-1946https://hdl.handle.net/20.500.12008/4317810.1016/j.microb.2023.100008Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation.Submitted by Pintos Natalia (nataliapintosmvd@gmail.com) on 2024-03-15T17:10:03Z No. of bitstreams: 2 license_rdf: 25790 bytes, checksum: 489f03e71d39068f329bdec8798bce58 (MD5) 10.1016.j.microb.2023.100008.pdf: 4333796 bytes, checksum: 20e5091d40bca6cae5729e46db66c051 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2024-03-19T12:17:30Z (GMT) No. of bitstreams: 2 license_rdf: 25790 bytes, checksum: 489f03e71d39068f329bdec8798bce58 (MD5) 10.1016.j.microb.2023.100008.pdf: 4333796 bytes, checksum: 20e5091d40bca6cae5729e46db66c051 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2024-03-19T12:23:30Z (GMT). No. of bitstreams: 2 license_rdf: 25790 bytes, checksum: 489f03e71d39068f329bdec8798bce58 (MD5) 10.1016.j.microb.2023.100008.pdf: 4333796 bytes, checksum: 20e5091d40bca6cae5729e46db66c051 (MD5) Previous issue date: 20238 h.application/pdfenengElsevierThe Microbe, 2023, 1: 100008.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse |
spellingShingle | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence Berais Rubio, Andrés Elite strain Inoculant Draft genome |
status_str | publishedVersion |
title | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
title_full | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
title_fullStr | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
title_full_unstemmed | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
title_short | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
title_sort | Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence |
topic | Elite strain Inoculant Draft genome |
url | https://hdl.handle.net/20.500.12008/43178 |