Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence

Berais Rubio, Andrés - Morel, María A. - Filippi, Carla V - Reyno, Rafael - Monza, Jorge

Resumen:

Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation.


Detalles Bibliográficos
2023
Elite strain
Inoculant
Draft genome
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/43178
Acceso abierto
Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
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author Berais Rubio, Andrés
author2 Morel, María A.
Filippi, Carla V
Reyno, Rafael
Monza, Jorge
author2_role author
author
author
author
author_facet Berais Rubio, Andrés
Morel, María A.
Filippi, Carla V
Reyno, Rafael
Monza, Jorge
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Berais Rubio Andrés, Universidad de la República (Uruguay). Facultad de Agronomía.
Morel María A., Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Ecología y Ciencias Ambientales.
Filippi Carla V, Universidad de la República (Uruguay). Facultad de Agronomía.
Reyno Rafael, INIA
Monza Jorge, niversidad de la República (Uruguay). Facultad de Agronomía.
dc.creator.none.fl_str_mv Berais Rubio, Andrés
Morel, María A.
Filippi, Carla V
Reyno, Rafael
Monza, Jorge
dc.date.accessioned.none.fl_str_mv 2024-03-19T12:23:30Z
dc.date.available.none.fl_str_mv 2024-03-19T12:23:30Z
dc.date.issued.none.fl_str_mv 2023
dc.description.abstract.none.fl_txt_mv Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation.
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dc.identifier.citation.es.fl_str_mv Berais Rubio, A, Morel, M, Filippi, C [y otros autores]. "Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence". The Microbe. [en línea] 2023, 1: 100008. 8 h. DOI: 10.1016/j.microb.2023.100008.
dc.identifier.doi.none.fl_str_mv 10.1016/j.microb.2023.100008
dc.identifier.issn.none.fl_str_mv 2950-1946
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/43178
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv Elsevier
dc.relation.ispartof.es.fl_str_mv The Microbe, 2023, 1: 100008.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Elite strain
Inoculant
Draft genome
dc.title.none.fl_str_mv Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation.
eu_rights_str_mv openAccess
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identifier_str_mv Berais Rubio, A, Morel, M, Filippi, C [y otros autores]. "Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence". The Microbe. [en línea] 2023, 1: 100008. 8 h. DOI: 10.1016/j.microb.2023.100008.
2950-1946
10.1016/j.microb.2023.100008
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
language eng
language_invalid_str_mv en
network_acronym_str COLIBRI
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oai_identifier_str oai:colibri.udelar.edu.uy:20.500.12008/43178
publishDate 2023
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
spelling Berais Rubio Andrés, Universidad de la República (Uruguay). Facultad de Agronomía.Morel María A., Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Ecología y Ciencias Ambientales.Filippi Carla V, Universidad de la República (Uruguay). Facultad de Agronomía.Reyno Rafael, INIAMonza Jorge, niversidad de la República (Uruguay). Facultad de Agronomía.2024-03-19T12:23:30Z2024-03-19T12:23:30Z2023Berais Rubio, A, Morel, M, Filippi, C [y otros autores]. "Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence". The Microbe. [en línea] 2023, 1: 100008. 8 h. DOI: 10.1016/j.microb.2023.100008.2950-1946https://hdl.handle.net/20.500.12008/4317810.1016/j.microb.2023.100008Ensifer (syn. Sinorhizobium) meliloti U143 is an effective nitrogen-fixing strain isolated from Uruguayan soils. For decades, this strain has been used as an inoculant for different alfalfa cultivars. Here we report for the first time a characterization of the U143 elite strain that includes the preliminary genomic sequence, its annotation, and physiological parameters related to its symbiotic efficiency and nitrate respiration capacity. Through Illumina sequencing, the genome of the U143 strain was sequenced. The genome length was 6,801,966 bp, and it contained two megaplasmids, an average GC content of 62.15 %, and 6522 protein-coding sequences. In the symbiotic plasmid, we identified nap, nir, nor, and nos sequences that explain the ability of the U143 strain to respire NO3 - in free-living and microaerobic conditions. Field assays performed in two locations for two years showed that alfalfa inoculated with the U143 strain produced 41 % more total shoot dry matter than the non-inoculated control, and between 61.3 % and 66.5 % of shoot N in alfalfa inoculated with strain U143 derived from nitrogen fixation.Submitted by Pintos Natalia (nataliapintosmvd@gmail.com) on 2024-03-15T17:10:03Z No. of bitstreams: 2 license_rdf: 25790 bytes, checksum: 489f03e71d39068f329bdec8798bce58 (MD5) 10.1016.j.microb.2023.100008.pdf: 4333796 bytes, checksum: 20e5091d40bca6cae5729e46db66c051 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2024-03-19T12:17:30Z (GMT) No. of bitstreams: 2 license_rdf: 25790 bytes, checksum: 489f03e71d39068f329bdec8798bce58 (MD5) 10.1016.j.microb.2023.100008.pdf: 4333796 bytes, checksum: 20e5091d40bca6cae5729e46db66c051 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2024-03-19T12:23:30Z (GMT). No. of bitstreams: 2 license_rdf: 25790 bytes, checksum: 489f03e71d39068f329bdec8798bce58 (MD5) 10.1016.j.microb.2023.100008.pdf: 4333796 bytes, checksum: 20e5091d40bca6cae5729e46db66c051 (MD5) Previous issue date: 20238 h.application/pdfenengElsevierThe Microbe, 2023, 1: 100008.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse
spellingShingle Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
Berais Rubio, Andrés
Elite strain
Inoculant
Draft genome
status_str publishedVersion
title Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
title_full Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
title_fullStr Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
title_full_unstemmed Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
title_short Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
title_sort Ensifer meliloti elite strain U143 used as alfalfa inoculant in Uruguay: characterization and draft genome sequence
topic Elite strain
Inoculant
Draft genome
url https://hdl.handle.net/20.500.12008/43178