Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model

García de Souza, Graciela Beatriz - Gutiérrez Coppetti, Verónica Andrea - Ríos, Néstor

Resumen:

The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.


Detalles Bibliográficos
2022
Neotropical
Killifish
Austrolebias
Giant genomes
Evolutionary model
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/41546
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author García de Souza, Graciela Beatriz
author2 Gutiérrez Coppetti, Verónica Andrea
Ríos, Néstor
author2_role author
author
author_facet García de Souza, Graciela Beatriz
Gutiérrez Coppetti, Verónica Andrea
Ríos, Néstor
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv García de Souza Graciela Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Gutiérrez Coppetti Verónica Andrea, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Ríos Néstor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
dc.creator.none.fl_str_mv García de Souza, Graciela Beatriz
Gutiérrez Coppetti, Verónica Andrea
Ríos, Néstor
dc.date.accessioned.none.fl_str_mv 2023-11-29T13:04:14Z
dc.date.available.none.fl_str_mv 2023-11-29T13:04:14Z
dc.date.issued.none.fl_str_mv 2022
dc.description.abstract.none.fl_txt_mv The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.
dc.format.extent.es.fl_str_mv 8 h.
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dc.identifier.citation.es.fl_str_mv García de Souza, G, Gutiérrez Coppetti, V y Ríos, N. "Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model". Frontiers in Genetics. [en línea] 2022, 13: 903683. 8 h. DOI: 10.3389/fgene.2022.903683
dc.identifier.doi.none.fl_str_mv 10.3389/fgene.2022.903683
dc.identifier.issn.none.fl_str_mv 1664-8021
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/41546
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv Frontiers Media
dc.relation.ispartof.es.fl_str_mv Frontiers in Genetics, 2022, 13: 903683
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Neotropical
Killifish
Austrolebias
Giant genomes
Evolutionary model
dc.title.none.fl_str_mv Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.
eu_rights_str_mv openAccess
format article
id COLIBRI_8f30e6c0e9d8ce975da01746805d547c
identifier_str_mv García de Souza, G, Gutiérrez Coppetti, V y Ríos, N. "Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model". Frontiers in Genetics. [en línea] 2022, 13: 903683. 8 h. DOI: 10.3389/fgene.2022.903683
1664-8021
10.3389/fgene.2022.903683
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
language eng
language_invalid_str_mv en
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publishDate 2022
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling García de Souza Graciela Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Gutiérrez Coppetti Verónica Andrea, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Ríos Néstor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.2023-11-29T13:04:14Z2023-11-29T13:04:14Z2022García de Souza, G, Gutiérrez Coppetti, V y Ríos, N. "Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model". Frontiers in Genetics. [en línea] 2022, 13: 903683. 8 h. DOI: 10.3389/fgene.2022.9036831664-8021https://hdl.handle.net/20.500.12008/4154610.3389/fgene.2022.903683The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.Submitted by Festari Camila (camifestari@gmail.com) on 2023-11-26T05:37:45Z No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.3389fgene.2022.903683.pdf: 1335177 bytes, checksum: f4f14c04a4d6420d9d04606a8ec8fbcf (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-11-29T12:43:54Z (GMT) No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.3389fgene.2022.903683.pdf: 1335177 bytes, checksum: f4f14c04a4d6420d9d04606a8ec8fbcf (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-11-29T13:04:14Z (GMT). No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.3389fgene.2022.903683.pdf: 1335177 bytes, checksum: f4f14c04a4d6420d9d04606a8ec8fbcf (MD5) Previous issue date: 20228 h.application/pdfenengFrontiers MediaFrontiers in Genetics, 2022, 13: 903683Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse
spellingShingle Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
García de Souza, Graciela Beatriz
Neotropical
Killifish
Austrolebias
Giant genomes
Evolutionary model
status_str publishedVersion
title Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
title_full Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
title_fullStr Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
title_full_unstemmed Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
title_short Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
title_sort Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
topic Neotropical
Killifish
Austrolebias
Giant genomes
Evolutionary model
url https://hdl.handle.net/20.500.12008/41546