Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model
Resumen:
The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.
2022 | |
Neotropical Killifish Austrolebias Giant genomes Evolutionary model |
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Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/41546 | |
Acceso abierto | |
Licencia Creative Commons Atribución (CC - By 4.0) |
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author | García de Souza, Graciela Beatriz |
author2 | Gutiérrez Coppetti, Verónica Andrea Ríos, Néstor |
author2_role | author author |
author_facet | García de Souza, Graciela Beatriz Gutiérrez Coppetti, Verónica Andrea Ríos, Néstor |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | García de Souza Graciela Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Gutiérrez Coppetti Verónica Andrea, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Ríos Néstor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. |
dc.creator.none.fl_str_mv | García de Souza, Graciela Beatriz Gutiérrez Coppetti, Verónica Andrea Ríos, Néstor |
dc.date.accessioned.none.fl_str_mv | 2023-11-29T13:04:14Z |
dc.date.available.none.fl_str_mv | 2023-11-29T13:04:14Z |
dc.date.issued.none.fl_str_mv | 2022 |
dc.description.abstract.none.fl_txt_mv | The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events. |
dc.format.extent.es.fl_str_mv | 8 h. |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | García de Souza, G, Gutiérrez Coppetti, V y Ríos, N. "Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model". Frontiers in Genetics. [en línea] 2022, 13: 903683. 8 h. DOI: 10.3389/fgene.2022.903683 |
dc.identifier.doi.none.fl_str_mv | 10.3389/fgene.2022.903683 |
dc.identifier.issn.none.fl_str_mv | 1664-8021 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/41546 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | Frontiers Media |
dc.relation.ispartof.es.fl_str_mv | Frontiers in Genetics, 2022, 13: 903683 |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Neotropical Killifish Austrolebias Giant genomes Evolutionary model |
dc.title.none.fl_str_mv | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_8f30e6c0e9d8ce975da01746805d547c |
identifier_str_mv | García de Souza, G, Gutiérrez Coppetti, V y Ríos, N. "Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model". Frontiers in Genetics. [en línea] 2022, 13: 903683. 8 h. DOI: 10.3389/fgene.2022.903683 1664-8021 10.3389/fgene.2022.903683 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/41546 |
publishDate | 2022 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
spelling | García de Souza Graciela Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Gutiérrez Coppetti Verónica Andrea, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Ríos Néstor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.2023-11-29T13:04:14Z2023-11-29T13:04:14Z2022García de Souza, G, Gutiérrez Coppetti, V y Ríos, N. "Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model". Frontiers in Genetics. [en línea] 2022, 13: 903683. 8 h. DOI: 10.3389/fgene.2022.9036831664-8021https://hdl.handle.net/20.500.12008/4154610.3389/fgene.2022.903683The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. Austrolebias is a specious genus of the family Rivulidae, with ~58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. Austrolebias constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA–increasing would be associated with a considerable proportion of transposable elements (TEs) found in the Austrolebias genomes. The genomic proportion of the moderately repetitive DNA in the A. charrua genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon Cynopoecilus melanotaenia (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of Austrolebias. Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.Submitted by Festari Camila (camifestari@gmail.com) on 2023-11-26T05:37:45Z No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.3389fgene.2022.903683.pdf: 1335177 bytes, checksum: f4f14c04a4d6420d9d04606a8ec8fbcf (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-11-29T12:43:54Z (GMT) No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.3389fgene.2022.903683.pdf: 1335177 bytes, checksum: f4f14c04a4d6420d9d04606a8ec8fbcf (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-11-29T13:04:14Z (GMT). No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.3389fgene.2022.903683.pdf: 1335177 bytes, checksum: f4f14c04a4d6420d9d04606a8ec8fbcf (MD5) Previous issue date: 20228 h.application/pdfenengFrontiers MediaFrontiers in Genetics, 2022, 13: 903683Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse |
spellingShingle | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model García de Souza, Graciela Beatriz Neotropical Killifish Austrolebias Giant genomes Evolutionary model |
status_str | publishedVersion |
title | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
title_full | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
title_fullStr | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
title_full_unstemmed | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
title_short | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
title_sort | Living in temporary ponds loading giant genomes: the neotropical annual killifish genus Austrolebias as new outstanding evolutionary model |
topic | Neotropical Killifish Austrolebias Giant genomes Evolutionary model |
url | https://hdl.handle.net/20.500.12008/41546 |