Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica
Resumen:
A rod-shaped and Gram-stain-negative bacterial strain, 1BT, was isolated from an air sample collected at King George Island, maritime Antarctica. Strain 1BT is strictly aerobic, psychrophilic, catalase-positive, oxidase-positive and non-motile. Growth of strain 1BT is observed at 0–20 °C (optimum, 10 °C), pH 6.0–8.0 (optimum, pH 8.0) and in the presence of 0–1.0% NaCl (optimum, 0.5 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequences places strain 1BT within the genus Hymenobacter and shows the highest similarity to Hymenobacter antarcticus VUG-A42aaT (97.5 %). The predominant menaquinone of strain 1BT is MK-7 and the major fatty acids (>10 %) comprise summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c; 32.5 %), iso-C15 : 0 (17.6 %) and anteiso C15 : 0 (12.3 %). The polar lipid profile consists of the major compounds phosphatidylethanolamine, phosphatidylserine, two unidentified aminolipids and one unidentified phospholipid. The DNA G+C content based on the draft genome sequence is 61.2 mol%. Based on the data from the current polyphasic study, 1BT represents a novel species of the genus Hymenobacter , for which the name Hymenobacter artigasi sp. nov. is suggested. The type strain is 1BT (=CCM 8970T=CGMCC 1.16843T).
| 2020 | |
|
Hymenobacter Psychrophiles Bacterial colonization Airborne bacteria Maritime Antarctica Oligotrophy |
|
| Inglés | |
| Universidad de la República | |
| COLIBRI | |
| https://hdl.handle.net/20.500.12008/31897 | |
| Acceso abierto | |
| Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
| _version_ | 1807522790938509312 |
|---|---|
| author | Roldán, Diego M. |
| author2 | Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Whitman, William B. Kralova, Stanislava Sedlacek, Ivo Busse Hans, Jurgen Menes, Rodrigo Javier |
| author2_role | author author author author author author author author |
| author_facet | Roldán, Diego M. Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Whitman, William B. Kralova, Stanislava Sedlacek, Ivo Busse Hans, Jurgen Menes, Rodrigo Javier |
| author_role | author |
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| collection | COLIBRI |
| dc.contributor.filiacion.none.fl_str_mv | Roldán Diego M., Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica. Kyrpides Nikos Woyke Tanja Shapiro Nicole Whitman William B. Kralova Stanislava Sedlacek Ivo Busse Hans Jurgen Menes Rodrigo Javier, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica. |
| dc.creator.none.fl_str_mv | Roldán, Diego M. Kyrpides, Nikos Woyke, Tanja Shapiro, Nicole Whitman, William B. Kralova, Stanislava Sedlacek, Ivo Busse Hans, Jurgen Menes, Rodrigo Javier |
| dc.date.accessioned.none.fl_str_mv | 2022-06-09T14:53:46Z |
| dc.date.available.none.fl_str_mv | 2022-06-09T14:53:46Z |
| dc.date.issued.none.fl_str_mv | 2020 |
| dc.description.abstract.none.fl_txt_mv | A rod-shaped and Gram-stain-negative bacterial strain, 1BT, was isolated from an air sample collected at King George Island, maritime Antarctica. Strain 1BT is strictly aerobic, psychrophilic, catalase-positive, oxidase-positive and non-motile. Growth of strain 1BT is observed at 0–20 °C (optimum, 10 °C), pH 6.0–8.0 (optimum, pH 8.0) and in the presence of 0–1.0% NaCl (optimum, 0.5 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequences places strain 1BT within the genus Hymenobacter and shows the highest similarity to Hymenobacter antarcticus VUG-A42aaT (97.5 %). The predominant menaquinone of strain 1BT is MK-7 and the major fatty acids (>10 %) comprise summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c; 32.5 %), iso-C15 : 0 (17.6 %) and anteiso C15 : 0 (12.3 %). The polar lipid profile consists of the major compounds phosphatidylethanolamine, phosphatidylserine, two unidentified aminolipids and one unidentified phospholipid. The DNA G+C content based on the draft genome sequence is 61.2 mol%. Based on the data from the current polyphasic study, 1BT represents a novel species of the genus Hymenobacter , for which the name Hymenobacter artigasi sp. nov. is suggested. The type strain is 1BT (=CCM 8970T=CGMCC 1.16843T). |
| dc.format.extent.es.fl_str_mv | 7 h. |
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| dc.identifier.citation.es.fl_str_mv | Roldán, D, Kyrpides, N, Woyke, T. [y otros] "Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica". International journal of systematic and evolutionary microbiology. [en línea] 2020, 70(9): 4935-4941. 7 h. DOI: 10.1099/ijsem.0.004362 |
| dc.identifier.doi.none.fl_str_mv | 10.1099/ijsem.0.004362 |
| dc.identifier.issn.none.fl_str_mv | 1466-5034 |
| dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/31897 |
| dc.language.iso.none.fl_str_mv | en eng |
| dc.publisher.es.fl_str_mv | Microbiology Society |
| dc.relation.ispartof.es.fl_str_mv | International journal of systematic and evolutionary microbiology, 2020, 70(9): 4935-4941 |
| dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
| dc.subject.es.fl_str_mv | Hymenobacter Psychrophiles Bacterial colonization Airborne bacteria Maritime Antarctica Oligotrophy |
| dc.title.none.fl_str_mv | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| dc.type.es.fl_str_mv | Artículo |
| dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
| dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
| description | A rod-shaped and Gram-stain-negative bacterial strain, 1BT, was isolated from an air sample collected at King George Island, maritime Antarctica. Strain 1BT is strictly aerobic, psychrophilic, catalase-positive, oxidase-positive and non-motile. Growth of strain 1BT is observed at 0–20 °C (optimum, 10 °C), pH 6.0–8.0 (optimum, pH 8.0) and in the presence of 0–1.0% NaCl (optimum, 0.5 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequences places strain 1BT within the genus Hymenobacter and shows the highest similarity to Hymenobacter antarcticus VUG-A42aaT (97.5 %). The predominant menaquinone of strain 1BT is MK-7 and the major fatty acids (>10 %) comprise summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c; 32.5 %), iso-C15 : 0 (17.6 %) and anteiso C15 : 0 (12.3 %). The polar lipid profile consists of the major compounds phosphatidylethanolamine, phosphatidylserine, two unidentified aminolipids and one unidentified phospholipid. The DNA G+C content based on the draft genome sequence is 61.2 mol%. Based on the data from the current polyphasic study, 1BT represents a novel species of the genus Hymenobacter , for which the name Hymenobacter artigasi sp. nov. is suggested. The type strain is 1BT (=CCM 8970T=CGMCC 1.16843T). |
| eu_rights_str_mv | openAccess |
| format | article |
| id | COLIBRI_8b4cc87b35fb99a600a82edc477026ab |
| identifier_str_mv | Roldán, D, Kyrpides, N, Woyke, T. [y otros] "Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica". International journal of systematic and evolutionary microbiology. [en línea] 2020, 70(9): 4935-4941. 7 h. DOI: 10.1099/ijsem.0.004362 1466-5034 10.1099/ijsem.0.004362 |
| instacron_str | Universidad de la República |
| institution | Universidad de la República |
| instname_str | Universidad de la República |
| language | eng |
| language_invalid_str_mv | en |
| network_acronym_str | COLIBRI |
| network_name_str | COLIBRI |
| oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/31897 |
| publishDate | 2020 |
| reponame_str | COLIBRI |
| repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
| repository.name.fl_str_mv | COLIBRI - Universidad de la República |
| repository_id_str | 4771 |
| rights_invalid_str_mv | Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
| spelling | Roldán Diego M., Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Kyrpides NikosWoyke TanjaShapiro NicoleWhitman William B.Kralova StanislavaSedlacek IvoBusse Hans JurgenMenes Rodrigo Javier, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.2022-06-09T14:53:46Z2022-06-09T14:53:46Z2020Roldán, D, Kyrpides, N, Woyke, T. [y otros] "Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica". International journal of systematic and evolutionary microbiology. [en línea] 2020, 70(9): 4935-4941. 7 h. DOI: 10.1099/ijsem.0.0043621466-5034https://hdl.handle.net/20.500.12008/3189710.1099/ijsem.0.004362A rod-shaped and Gram-stain-negative bacterial strain, 1BT, was isolated from an air sample collected at King George Island, maritime Antarctica. Strain 1BT is strictly aerobic, psychrophilic, catalase-positive, oxidase-positive and non-motile. Growth of strain 1BT is observed at 0–20 °C (optimum, 10 °C), pH 6.0–8.0 (optimum, pH 8.0) and in the presence of 0–1.0% NaCl (optimum, 0.5 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequences places strain 1BT within the genus Hymenobacter and shows the highest similarity to Hymenobacter antarcticus VUG-A42aaT (97.5 %). The predominant menaquinone of strain 1BT is MK-7 and the major fatty acids (>10 %) comprise summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c; 32.5 %), iso-C15 : 0 (17.6 %) and anteiso C15 : 0 (12.3 %). The polar lipid profile consists of the major compounds phosphatidylethanolamine, phosphatidylserine, two unidentified aminolipids and one unidentified phospholipid. The DNA G+C content based on the draft genome sequence is 61.2 mol%. Based on the data from the current polyphasic study, 1BT represents a novel species of the genus Hymenobacter , for which the name Hymenobacter artigasi sp. nov. is suggested. The type strain is 1BT (=CCM 8970T=CGMCC 1.16843T).Submitted by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-06-09T14:39:45Z No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 4935_ijsem004362.pdf: 318767 bytes, checksum: 820935ef047ab225de38c320f1524f6b (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-06-09T14:40:21Z (GMT) No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 4935_ijsem004362.pdf: 318767 bytes, checksum: 820935ef047ab225de38c320f1524f6b (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-06-09T14:53:46Z (GMT). No. of bitstreams: 2 license_rdf: 21687 bytes, checksum: 749156fd3854beb422ddf543c77fb5b1 (MD5) 4935_ijsem004362.pdf: 318767 bytes, checksum: 820935ef047ab225de38c320f1524f6b (MD5) Previous issue date: 20207 h.application/pdfenengMicrobiology SocietyInternational journal of systematic and evolutionary microbiology, 2020, 70(9): 4935-4941Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0)HymenobacterPsychrophilesBacterial colonizationAirborne bacteriaMaritime AntarcticaOligotrophyHymenobacter artigasi sp. nov., isolated from air sampling in maritime AntarcticaArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaRoldán, Diego M.Kyrpides, NikosWoyke, TanjaShapiro, NicoleWhitman, William B.Kralova, StanislavaSedlacek, IvoBusse Hans, JurgenMenes, Rodrigo JavierLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/31897/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; charset=utf-847http://localhost:8080/xmlui/bitstream/20.500.12008/31897/2/license_url966d4a1cc97b2c4389b5142dd97d3c7fMD52license_textlicense_texttext/html; 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- Universidad de la Repúblicafalse |
| spellingShingle | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica Roldán, Diego M. Hymenobacter Psychrophiles Bacterial colonization Airborne bacteria Maritime Antarctica Oligotrophy |
| status_str | publishedVersion |
| title | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| title_full | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| title_fullStr | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| title_full_unstemmed | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| title_short | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| title_sort | Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica |
| topic | Hymenobacter Psychrophiles Bacterial colonization Airborne bacteria Maritime Antarctica Oligotrophy |
| url | https://hdl.handle.net/20.500.12008/31897 |
