Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe
Resumen:
Most HIV-1 subtype B infections in North America and Europe seem to have resulted from the expansion of a single pandemic lineage (B PANDEMIC) disseminated from the United States (US). Some non-pandemic subtype B strains of Caribbean origin (B CAR) may have also reached North America and Europe, but their epidemiological relevance in those regions remains largely unknown. Here we analyze a total of 20,045 HIV-1 subtype B pol sequences from the US, Canada, and Europe, to estimate the prevalence and to reconstruct the spatiotemporal dynamics of dissemination of HIV-1 B CAR strains in those regions. We find that B CAR strains were probably disseminated from the Caribbean into North America and Europe at multiple times since the early 1970s onwards. The B CAR strains reached the US, Canada and at least 16 different European countries, where they account for a very low fraction (<5%) of subtype B infections, with exception of the Czech Republic (7.7%). We also find evidence of the onward transmission of B CAR clades in the US, Canada, the Czech Republic, Germany, Italy, Spain and the UK, as well as short-distance spreading of B CAR lineages between neighboring European countries from Central and Western Europe, and long-distance dissemination between the US and Europe.
2016 | |
Virus HIV Transmission of infections |
|
Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/22010 | |
Acceso abierto | |
Licencia Creative Commons Atribución (CC –BY 4.0) |
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---|---|
author | Cabello, M. |
author2 | Romero Brunetto, Héctor Gabriel Bello, Gonzalo |
author2_role | author author |
author_facet | Cabello, M. Romero Brunetto, Héctor Gabriel Bello, Gonzalo |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.es.fl_str_mv | Romero, Héctor. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. |
dc.creator.none.fl_str_mv | Cabello, M. Romero Brunetto, Héctor Gabriel Bello, Gonzalo |
dc.date.accessioned.none.fl_str_mv | 2019-10-02T22:08:25Z |
dc.date.available.none.fl_str_mv | 2019-10-02T22:08:25Z |
dc.date.issued.es.fl_str_mv | 2016 |
dc.date.submitted.es.fl_str_mv | 20190930 |
dc.description.abstract.none.fl_txt_mv | Most HIV-1 subtype B infections in North America and Europe seem to have resulted from the expansion of a single pandemic lineage (B PANDEMIC) disseminated from the United States (US). Some non-pandemic subtype B strains of Caribbean origin (B CAR) may have also reached North America and Europe, but their epidemiological relevance in those regions remains largely unknown. Here we analyze a total of 20,045 HIV-1 subtype B pol sequences from the US, Canada, and Europe, to estimate the prevalence and to reconstruct the spatiotemporal dynamics of dissemination of HIV-1 B CAR strains in those regions. We find that B CAR strains were probably disseminated from the Caribbean into North America and Europe at multiple times since the early 1970s onwards. The B CAR strains reached the US, Canada and at least 16 different European countries, where they account for a very low fraction (<5%) of subtype B infections, with exception of the Czech Republic (7.7%). We also find evidence of the onward transmission of B CAR clades in the US, Canada, the Czech Republic, Germany, Italy, Spain and the UK, as well as short-distance spreading of B CAR lineages between neighboring European countries from Central and Western Europe, and long-distance dissemination between the US and Europe. |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Cabello, M., Romero, H., Bello, G. Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe. Scientific Reports, 2016, 6, art. nro. 33971. doi: 10.1038/srep33971 |
dc.identifier.doi.es.fl_str_mv | 10.1038/srep33971 |
dc.identifier.issn.es.fl_str_mv | 2045-2322 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/22010 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | Nature Publishing Group |
dc.relation.ispartof.es.fl_str_mv | Scientific Reports, 2016, 6, art. no. 33971 |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC –BY 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Virus |
dc.subject.none.fl_str_mv | HIV Transmission of infections |
dc.title.none.fl_str_mv | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Most HIV-1 subtype B infections in North America and Europe seem to have resulted from the expansion of a single pandemic lineage (B PANDEMIC) disseminated from the United States (US). Some non-pandemic subtype B strains of Caribbean origin (B CAR) may have also reached North America and Europe, but their epidemiological relevance in those regions remains largely unknown. Here we analyze a total of 20,045 HIV-1 subtype B pol sequences from the US, Canada, and Europe, to estimate the prevalence and to reconstruct the spatiotemporal dynamics of dissemination of HIV-1 B CAR strains in those regions. We find that B CAR strains were probably disseminated from the Caribbean into North America and Europe at multiple times since the early 1970s onwards. The B CAR strains reached the US, Canada and at least 16 different European countries, where they account for a very low fraction (<5%) of subtype B infections, with exception of the Czech Republic (7.7%). We also find evidence of the onward transmission of B CAR clades in the US, Canada, the Czech Republic, Germany, Italy, Spain and the UK, as well as short-distance spreading of B CAR lineages between neighboring European countries from Central and Western Europe, and long-distance dissemination between the US and Europe. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_7b984b45c0442e3b783eeac28a5e99a5 |
identifier_str_mv | Cabello, M., Romero, H., Bello, G. Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe. Scientific Reports, 2016, 6, art. nro. 33971. doi: 10.1038/srep33971 2045-2322 10.1038/srep33971 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/22010 |
publishDate | 2016 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución (CC –BY 4.0) |
spelling | Romero, Héctor. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.2019-10-02T22:08:25Z2019-10-02T22:08:25Z201620190930Cabello, M., Romero, H., Bello, G. Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe. Scientific Reports, 2016, 6, art. nro. 33971. doi: 10.1038/srep339712045-2322https://hdl.handle.net/20.500.12008/2201010.1038/srep33971Most HIV-1 subtype B infections in North America and Europe seem to have resulted from the expansion of a single pandemic lineage (B PANDEMIC) disseminated from the United States (US). Some non-pandemic subtype B strains of Caribbean origin (B CAR) may have also reached North America and Europe, but their epidemiological relevance in those regions remains largely unknown. Here we analyze a total of 20,045 HIV-1 subtype B pol sequences from the US, Canada, and Europe, to estimate the prevalence and to reconstruct the spatiotemporal dynamics of dissemination of HIV-1 B CAR strains in those regions. We find that B CAR strains were probably disseminated from the Caribbean into North America and Europe at multiple times since the early 1970s onwards. The B CAR strains reached the US, Canada and at least 16 different European countries, where they account for a very low fraction (<5%) of subtype B infections, with exception of the Czech Republic (7.7%). We also find evidence of the onward transmission of B CAR clades in the US, Canada, the Czech Republic, Germany, Italy, Spain and the UK, as well as short-distance spreading of B CAR lineages between neighboring European countries from Central and Western Europe, and long-distance dissemination between the US and Europe.Made available in DSpace on 2019-10-02T22:08:25Z (GMT). No. of bitstreams: 5 101038srep33971.pdf: 2193155 bytes, checksum: 6aba798fcda626c405aaf1782042bdc0 (MD5) license_text: 38297 bytes, checksum: 4fe6ac477f5a2df0424a5ff1a9bf000c (MD5) license_url: 44 bytes, checksum: a0ebbeafb9d2ec7cbb19d7137ebc392c (MD5) license_rdf: 8067 bytes, checksum: bc1bc9659a4a06e9516479a5adfd8b0e (MD5) license.txt: 4194 bytes, checksum: 7f2e2c17ef6585de66da58d1bfa8b5e1 (MD5) Previous issue date: 2016application/pdfenengNature Publishing GroupScientific Reports, 2016, 6, art. no. 33971Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad De La República. (Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse |
spellingShingle | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe Cabello, M. Virus HIV Transmission of infections |
status_str | publishedVersion |
title | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
title_full | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
title_fullStr | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
title_full_unstemmed | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
title_short | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
title_sort | Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe |
topic | Virus HIV Transmission of infections |
url | https://hdl.handle.net/20.500.12008/22010 |