Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study
Resumen:
Eukaryotic genomes exhibit a dynamic interplay between single-copy sequences and repetitive DNA elements, with satellite DNA (satDNA) representing a substantial portion, mainly situated at telomeric and centromeric chromosomal regions. We utilized Illumina next-generation sequencing data from Adalia bipunctata to investigate its satellitome. Cytogenetic mapping via fluorescence in situ hybridization was performed for the most abundant satDNA families. In silico localization of satDNAs was carried out using the CHRISMAPP (Chromosome In Silico Mapping) pipeline on the high-fidelity chromosome-level assembly already available for this species, enabling a meticulous characterization and localization of multiple satDNA families. Additionally, we analyzed the conservation of the satellitome at an interspecific scale. Specifically, we employed the CHRISMAPP pipeline to map the satDNAs of A. bipunctata onto the genome of Adalia decempunctata, which has also been sequenced and assembled at the chromosome level. This analysis, along with the creation of a synteny map between the two species, suggests a rapid turnover of centromeric satDNA between these species and the potential occurrence of chromosomal rearrangements, despite the considerable conservation of their satellitomes. Specific satDNA families in the sex chromosomes of both species suggest a role in sex chromosome differentiation. Our interspecific comparative study can provide a significant advance in the understanding of the repeat genome organization and evolution in beetles.
| 2024 | |
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Coleoptera Coccinellidae Adalia bipunctata Adalia decempunctata Ladybird beetle RepeatExplorer2 Satellite DNA Satellitome Fluorescence in situ hybridization (FISH) Chromosome In Silico Mapping (CHRISMAPP) Karyotype evolution |
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| Inglés | |
| Universidad de la República | |
| COLIBRI | |
| https://hdl.handle.net/20.500.12008/50188 | |
| Acceso abierto | |
| Licencia Creative Commons Atribución (CC - By 4.0) |
| _version_ | 1877555143510065152 |
|---|---|
| author | Mora, Pablo |
| author2 | Rico-Porras, José M. Palomeque, Teresa Montiel, Eugenia E. Pita Mimbacas, Sebastián Cabral de Mello, Diogo C. Lorite, Pedro |
| author2_role | author author author author author author |
| author_facet | Mora, Pablo Rico-Porras, José M. Palomeque, Teresa Montiel, Eugenia E. Pita Mimbacas, Sebastián Cabral de Mello, Diogo C. Lorite, Pedro |
| author_role | author |
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| bitstream.checksumAlgorithm.fl_str_mv | MD5 MD5 MD5 MD5 MD5 |
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| collection | COLIBRI |
| dc.contributor.filiacion.none.fl_str_mv | Mora Pablo Rico-Porras José M. Palomeque Teresa Montiel Eugenia E. Pita Mimbacas Sebastián, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Cabral de Mello Diogo C. Lorite Pedro |
| dc.creator.none.fl_str_mv | Mora, Pablo Rico-Porras, José M. Palomeque, Teresa Montiel, Eugenia E. Pita Mimbacas, Sebastián Cabral de Mello, Diogo C. Lorite, Pedro |
| dc.date.accessioned.none.fl_str_mv | 2025-06-02T17:33:48Z |
| dc.date.available.none.fl_str_mv | 2025-06-02T17:33:48Z |
| dc.date.issued.none.fl_str_mv | 2024 |
| dc.description.abstract.none.fl_txt_mv | Eukaryotic genomes exhibit a dynamic interplay between single-copy sequences and repetitive DNA elements, with satellite DNA (satDNA) representing a substantial portion, mainly situated at telomeric and centromeric chromosomal regions. We utilized Illumina next-generation sequencing data from Adalia bipunctata to investigate its satellitome. Cytogenetic mapping via fluorescence in situ hybridization was performed for the most abundant satDNA families. In silico localization of satDNAs was carried out using the CHRISMAPP (Chromosome In Silico Mapping) pipeline on the high-fidelity chromosome-level assembly already available for this species, enabling a meticulous characterization and localization of multiple satDNA families. Additionally, we analyzed the conservation of the satellitome at an interspecific scale. Specifically, we employed the CHRISMAPP pipeline to map the satDNAs of A. bipunctata onto the genome of Adalia decempunctata, which has also been sequenced and assembled at the chromosome level. This analysis, along with the creation of a synteny map between the two species, suggests a rapid turnover of centromeric satDNA between these species and the potential occurrence of chromosomal rearrangements, despite the considerable conservation of their satellitomes. Specific satDNA families in the sex chromosomes of both species suggest a role in sex chromosome differentiation. Our interspecific comparative study can provide a significant advance in the understanding of the repeat genome organization and evolution in beetles. |
| dc.description.es.fl_txt_mv | Material suplementario en: https://www.mdpi.com/article/10.3390/ijms25179214/s1 |
| dc.format.extent.es.fl_str_mv | 23 h |
| dc.format.mimetype.es.fl_str_mv | application/pdf |
| dc.identifier.citation.es.fl_str_mv | Mora, P, Rico-Porras, J, Palomeque, T [y otros autores]. "Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study". International Journal of Molecular Sciences. [en línea] 2024, 25(17): 9214. 23 h. DOI: 10.3390/ijms25179214 |
| dc.identifier.doi.none.fl_str_mv | 10.3390/ijms25179214 |
| dc.identifier.issn.none.fl_str_mv | 1422-0067 |
| dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/50188 |
| dc.language.iso.none.fl_str_mv | en eng |
| dc.publisher.es.fl_str_mv | MDPI |
| dc.relation.none.fl_str_mv | International Journal of Molecular Sciences, 2024, 25(17): 9214. |
| dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
| dc.subject.es.fl_str_mv | Coleoptera Coccinellidae Adalia bipunctata Adalia decempunctata Ladybird beetle RepeatExplorer2 Satellite DNA Satellitome Fluorescence in situ hybridization (FISH) Chromosome In Silico Mapping (CHRISMAPP) Karyotype evolution |
| dc.title.none.fl_str_mv | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| dc.type.es.fl_str_mv | Artículo |
| dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
| dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
| description | Material suplementario en: https://www.mdpi.com/article/10.3390/ijms25179214/s1 |
| eu_rights_str_mv | openAccess |
| format | article |
| id | COLIBRI_6e6ca9e41624c4313a02419f05dfae85 |
| identifier_str_mv | Mora, P, Rico-Porras, J, Palomeque, T [y otros autores]. "Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study". International Journal of Molecular Sciences. [en línea] 2024, 25(17): 9214. 23 h. DOI: 10.3390/ijms25179214 1422-0067 10.3390/ijms25179214 |
| instacron_str | Universidad de la República |
| institution | Universidad de la República |
| instname_str | Universidad de la República |
| language | eng |
| language_invalid_str_mv | en |
| network_acronym_str | COLIBRI |
| network_name_str | COLIBRI |
| oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/50188 |
| publishDate | 2024 |
| reponame_str | COLIBRI |
| repository.mail.fl_str_mv | karina.camps@seciu.edu.uy |
| repository.name.fl_str_mv | COLIBRI - Universidad de la República |
| repository_id_str | 4771 |
| rights_invalid_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
| spelling | Mora PabloRico-Porras José M.Palomeque TeresaMontiel Eugenia E.Pita Mimbacas Sebastián, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Cabral de Mello Diogo C.Lorite Pedro2025-06-02T17:33:48Z2025-06-02T17:33:48Z2024Mora, P, Rico-Porras, J, Palomeque, T [y otros autores]. "Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study". International Journal of Molecular Sciences. [en línea] 2024, 25(17): 9214. 23 h. DOI: 10.3390/ijms251792141422-0067https://hdl.handle.net/20.500.12008/5018810.3390/ijms25179214Material suplementario en: https://www.mdpi.com/article/10.3390/ijms25179214/s1Eukaryotic genomes exhibit a dynamic interplay between single-copy sequences and repetitive DNA elements, with satellite DNA (satDNA) representing a substantial portion, mainly situated at telomeric and centromeric chromosomal regions. We utilized Illumina next-generation sequencing data from Adalia bipunctata to investigate its satellitome. Cytogenetic mapping via fluorescence in situ hybridization was performed for the most abundant satDNA families. In silico localization of satDNAs was carried out using the CHRISMAPP (Chromosome In Silico Mapping) pipeline on the high-fidelity chromosome-level assembly already available for this species, enabling a meticulous characterization and localization of multiple satDNA families. Additionally, we analyzed the conservation of the satellitome at an interspecific scale. Specifically, we employed the CHRISMAPP pipeline to map the satDNAs of A. bipunctata onto the genome of Adalia decempunctata, which has also been sequenced and assembled at the chromosome level. This analysis, along with the creation of a synteny map between the two species, suggests a rapid turnover of centromeric satDNA between these species and the potential occurrence of chromosomal rearrangements, despite the considerable conservation of their satellitomes. Specific satDNA families in the sex chromosomes of both species suggest a role in sex chromosome differentiation. Our interspecific comparative study can provide a significant advance in the understanding of the repeat genome organization and evolution in beetles.Submitted by Pintos Natalia (nataliapintosmvd@gmail.com) on 2025-06-02T13:53:51Z No. of bitstreams: 2 license_rdf: 24942 bytes, checksum: 58cb336ce230a47d2f88ad02838a665f (MD5) 10.3390-ijms25179214.pdf: 5090425 bytes, checksum: 47a24432565ca15c2c938e0f64676252 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2025-06-02T17:27:58Z (GMT) No. of bitstreams: 2 license_rdf: 24942 bytes, checksum: 58cb336ce230a47d2f88ad02838a665f (MD5) 10.3390-ijms25179214.pdf: 5090425 bytes, checksum: 47a24432565ca15c2c938e0f64676252 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2025-06-02T17:33:48Z (GMT). No. of bitstreams: 2 license_rdf: 24942 bytes, checksum: 58cb336ce230a47d2f88ad02838a665f (MD5) 10.3390-ijms25179214.pdf: 5090425 bytes, checksum: 47a24432565ca15c2c938e0f64676252 (MD5) Previous issue date: 202423 happlication/pdfenengMDPIInternational Journal of Molecular Sciences, 2024, 25(17): 9214.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)ColeopteraCoccinellidaeAdalia bipunctataAdalia decempunctataLadybird beetleRepeatExplorer2Satellite DNASatellitomeFluorescence in situ hybridization (FISH)Chromosome In Silico Mapping (CHRISMAPP)Karyotype evolutionSatellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific studyArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaMora, PabloRico-Porras, José M.Palomeque, TeresaMontiel, Eugenia E.Pita Mimbacas, SebastiánCabral de Mello, Diogo C.Lorite, PedroLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/50188/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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- Universidad de la Repúblicafalse |
| spellingShingle | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study Mora, Pablo Coleoptera Coccinellidae Adalia bipunctata Adalia decempunctata Ladybird beetle RepeatExplorer2 Satellite DNA Satellitome Fluorescence in situ hybridization (FISH) Chromosome In Silico Mapping (CHRISMAPP) Karyotype evolution |
| status_str | publishedVersion |
| title | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| title_full | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| title_fullStr | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| title_full_unstemmed | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| title_short | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| title_sort | Satellitome analysis of Adalia bipunctata (Coleoptera): revealing centromeric turnover and potential chromosome rearrangements in a comparative interspecific study |
| topic | Coleoptera Coccinellidae Adalia bipunctata Adalia decempunctata Ladybird beetle RepeatExplorer2 Satellite DNA Satellitome Fluorescence in situ hybridization (FISH) Chromosome In Silico Mapping (CHRISMAPP) Karyotype evolution |
| url | https://hdl.handle.net/20.500.12008/50188 |