Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection

Fernández Liñares, Germán - Fernández Liñares, Ignacio - Almansa, Mónica - Mastrángelo, Pedro - Lema, Gabriel - Fernández Flores, Germán - Musé, Pablo - Castiglioni, Enrique - Tailanian, Matias

Resumen:

Soybean producers suffer from caterpillar damage in many areas of the world. Estimated average economic losses are annually 500 million USD in Brazil, Argentina, Paraguay and Uruguay. Designing efficient pest control management using selective and targeted pesticide applications is extremely important both from economic and environmental perspectives. With that in mind, we conducted a research program during the 2013-2014 and 2014-2015 planting seasons in a 4,000 ha soybean farm, seeking to achieve early pest detection. Nowadays pest presence is evaluated using manual, labor-intensive counting methods based on sampling strategies which are time consuming and imprecise. The experiment was conducted as follows. Using manual counting methods as ground-truth, a spectrometer capturing reflectance from 400 to 1100 nm was used to measure the reflectance of soy plants. A first conclusion, resulting from measuring the spectral response at leaves level, showed that stress was a property of plants since different leaves with different levels of damage yielded the same spectral response. Then, to assess the applicability of unsupervised classification of plants as healthy, biotic-stressed or abiotic-stressed, feature extraction and selection from leaves spectral signatures, combined with a Supported Vector Machine classifier was designed. Optimization of SVM parameters using grid search with cross-validation, along with classification evaluation by ten-folds cross-validation showed a correct classification rate of 95,% consistently on both seasons. Controlled experiments using cages with different numbers of caterpillars--including caterpillar-free plants--were also conducted to evaluate consistency in trends of the spectral response as well as the extracted features


Detalles Bibliográficos
2015
Soy plant
Defoliation
Point spectrometer
Spectral signature
UAV
Multispectral camera
Biotic stress
Abiotic stress
Support vector machine
Procesamiento de Señales
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/42697
Acceso abierto
Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
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author Fernández Liñares, Germán
author2 Fernández Liñares, Ignacio
Almansa, Mónica
Mastrángelo, Pedro
Lema, Gabriel
Fernández Flores, Germán
Musé, Pablo
Castiglioni, Enrique
Tailanian, Matias
author2_role author
author
author
author
author
author
author
author
author_facet Fernández Liñares, Germán
Fernández Liñares, Ignacio
Almansa, Mónica
Mastrángelo, Pedro
Lema, Gabriel
Fernández Flores, Germán
Musé, Pablo
Castiglioni, Enrique
Tailanian, Matias
author_role author
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collection COLIBRI
dc.creator.none.fl_str_mv Fernández Liñares, Germán
Fernández Liñares, Ignacio
Almansa, Mónica
Mastrángelo, Pedro
Lema, Gabriel
Fernández Flores, Germán
Musé, Pablo
Castiglioni, Enrique
Tailanian, Matias
dc.date.accessioned.none.fl_str_mv 2024-02-26T19:52:41Z
dc.date.available.none.fl_str_mv 2024-02-26T19:52:41Z
dc.date.issued.es.fl_str_mv 2015
dc.date.submitted.es.fl_str_mv 20240223
dc.description.abstract.none.fl_txt_mv Soybean producers suffer from caterpillar damage in many areas of the world. Estimated average economic losses are annually 500 million USD in Brazil, Argentina, Paraguay and Uruguay. Designing efficient pest control management using selective and targeted pesticide applications is extremely important both from economic and environmental perspectives. With that in mind, we conducted a research program during the 2013-2014 and 2014-2015 planting seasons in a 4,000 ha soybean farm, seeking to achieve early pest detection. Nowadays pest presence is evaluated using manual, labor-intensive counting methods based on sampling strategies which are time consuming and imprecise. The experiment was conducted as follows. Using manual counting methods as ground-truth, a spectrometer capturing reflectance from 400 to 1100 nm was used to measure the reflectance of soy plants. A first conclusion, resulting from measuring the spectral response at leaves level, showed that stress was a property of plants since different leaves with different levels of damage yielded the same spectral response. Then, to assess the applicability of unsupervised classification of plants as healthy, biotic-stressed or abiotic-stressed, feature extraction and selection from leaves spectral signatures, combined with a Supported Vector Machine classifier was designed. Optimization of SVM parameters using grid search with cross-validation, along with classification evaluation by ten-folds cross-validation showed a correct classification rate of 95,% consistently on both seasons. Controlled experiments using cages with different numbers of caterpillars--including caterpillar-free plants--were also conducted to evaluate consistency in trends of the spectral response as well as the extracted features
dc.description.es.fl_txt_mv Trabajo presentado en SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 96372I (14 October 2015)
dc.identifier.citation.es.fl_str_mv Tailanián, M, Castiglioni, E, Musé, P, Fernández Flores, G, Lema, G, Mastrángelo, P, Almansa, M, IFernández Liñares, I, Fernández Liñares, G. "Early pest detection in soy plantations from hyperspectral measurements: a case study for caterpillar detection" Publicado en Proceedings of SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 96372I (14 October 2015); https://doi.org/10.1117/12.2195083
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/42697
dc.language.iso.none.fl_str_mv en
eng
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Soy plant
Defoliation
Point spectrometer
Spectral signature
UAV
Multispectral camera
Biotic stress
Abiotic stress
Support vector machine
dc.subject.other.es.fl_str_mv Procesamiento de Señales
dc.title.none.fl_str_mv Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
dc.type.es.fl_str_mv Ponencia
dc.type.none.fl_str_mv info:eu-repo/semantics/conferenceObject
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Trabajo presentado en SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 96372I (14 October 2015)
eu_rights_str_mv openAccess
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identifier_str_mv Tailanián, M, Castiglioni, E, Musé, P, Fernández Flores, G, Lema, G, Mastrángelo, P, Almansa, M, IFernández Liñares, I, Fernández Liñares, G. "Early pest detection in soy plantations from hyperspectral measurements: a case study for caterpillar detection" Publicado en Proceedings of SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 96372I (14 October 2015); https://doi.org/10.1117/12.2195083
instacron_str Universidad de la República
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network_acronym_str COLIBRI
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oai_identifier_str oai:colibri.udelar.edu.uy:20.500.12008/42697
publishDate 2015
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
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rights_invalid_str_mv Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
spelling 2024-02-26T19:52:41Z2024-02-26T19:52:41Z201520240223Tailanián, M, Castiglioni, E, Musé, P, Fernández Flores, G, Lema, G, Mastrángelo, P, Almansa, M, IFernández Liñares, I, Fernández Liñares, G. "Early pest detection in soy plantations from hyperspectral measurements: a case study for caterpillar detection" Publicado en Proceedings of SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 96372I (14 October 2015); https://doi.org/10.1117/12.2195083https://hdl.handle.net/20.500.12008/42697Trabajo presentado en SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 96372I (14 October 2015)Soybean producers suffer from caterpillar damage in many areas of the world. Estimated average economic losses are annually 500 million USD in Brazil, Argentina, Paraguay and Uruguay. Designing efficient pest control management using selective and targeted pesticide applications is extremely important both from economic and environmental perspectives. With that in mind, we conducted a research program during the 2013-2014 and 2014-2015 planting seasons in a 4,000 ha soybean farm, seeking to achieve early pest detection. Nowadays pest presence is evaluated using manual, labor-intensive counting methods based on sampling strategies which are time consuming and imprecise. The experiment was conducted as follows. Using manual counting methods as ground-truth, a spectrometer capturing reflectance from 400 to 1100 nm was used to measure the reflectance of soy plants. A first conclusion, resulting from measuring the spectral response at leaves level, showed that stress was a property of plants since different leaves with different levels of damage yielded the same spectral response. Then, to assess the applicability of unsupervised classification of plants as healthy, biotic-stressed or abiotic-stressed, feature extraction and selection from leaves spectral signatures, combined with a Supported Vector Machine classifier was designed. Optimization of SVM parameters using grid search with cross-validation, along with classification evaluation by ten-folds cross-validation showed a correct classification rate of 95,% consistently on both seasons. Controlled experiments using cages with different numbers of caterpillars--including caterpillar-free plants--were also conducted to evaluate consistency in trends of the spectral response as well as the extracted featuresMade available in DSpace on 2024-02-26T19:52:41Z (GMT). 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Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)Soy plantDefoliationPoint spectrometerSpectral signatureUAVMultispectral cameraBiotic stressAbiotic stressSupport vector machineProcesamiento de SeñalesEarly pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detectionPonenciainfo:eu-repo/semantics/conferenceObjectinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFernández Liñares, GermánFernández Liñares, IgnacioAlmansa, MónicaMastrángelo, PedroLema, GabrielFernández Flores, GermánMusé, PabloCastiglioni, EnriqueTailanian, 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- Universidad de la Repúblicafalse
spellingShingle Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
Fernández Liñares, Germán
Soy plant
Defoliation
Point spectrometer
Spectral signature
UAV
Multispectral camera
Biotic stress
Abiotic stress
Support vector machine
Procesamiento de Señales
status_str publishedVersion
title Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
title_full Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
title_fullStr Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
title_full_unstemmed Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
title_short Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
title_sort Early pest detection in soy plantations from hyperspectral measurements : A case study for caterpillar detection
topic Soy plant
Defoliation
Point spectrometer
Spectral signature
UAV
Multispectral camera
Biotic stress
Abiotic stress
Support vector machine
Procesamiento de Señales
url https://hdl.handle.net/20.500.12008/42697