Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth

Fort Canobra, Rafael S - Mathó, Cecilia - Geraldo, Murilo Vieira - Ottati Braselli, María Carolina - Yamashita, A. S. - Saito, K. C. - Leite, K. R. M. - Méndez, M. - Maedo, N. - Méndez, L. - Garat, Beatriz - Kimura, E. T. - Sotelo Silveira, José Roberto - Duhagon, María Ana

Resumen:

Background: Nc886 is a 102 bp non-coding RNA transcript initially classified as a microRNA precursor (Pre-miR-886), later as a divergent homologue of the vault RNAs (vtRNA 2-1) and more recently as a novel type of RNA (nc886). Although nc886/vtRNA2-1/Pre-miR-886 identity is still controversial, it was shown to be epigenetically controlled, presenting both tumor suppressor and oncogenic function in different cancers. Here, we study for the first time the role of nc886 in prostate cancer. Methods: Nc886 promoter methylation status and its correlation with patient clinical parameters or DNMTs levels were evaluated in TCGA and specific GEO prostate tissue datasets. Nc886 level was measured by RT-qPCR to compare normal/neoplastic prostate cells from radical prostatectomies and cell lines, and to assess nc886 response to demethylating agents. The effect of nc886 recovery in cell proliferation (in vitro and in vivo) and invasion (in vitro) was evaluated using lentiviral transduced DU145 and LNCaP cell lines. The association between the expression of nc886 and selected genes was analyzed in the TCGA-PRAD cohort. Results: Nc886 promoter methylation increases in tumor vs. normal prostate tissue, as well as in metastatic vs. normal prostate tissue. Additionally, nc886 promoter methylation correlates with prostate cancer clinical staging, including biochemical recurrence, Clinical T-value and Gleason score. Nc886 transcript is downregulated in tumor vs. normal tissue -in agreement with its promoter methylation status- and increases upon demethylating treatment. In functional studies, the overexpression of nc886 in the LNCaP and DU145 cell line leads to a decreased in vitro cell proliferation and invasion, as well as a reduced in vivo cell growth in NUDE-mice tumor xenografts. Finally, nc886 expression associates with the prostate cancer cell cycle progression gene signature in TCGA-PRAD. Conclusions: Our data suggest a tumor suppressor role for nc886 in the prostate, whose expression is epigenetically silenced in cancer leading to an increase in cell proliferation and invasion. Nc886 might hold clinical value in prostate cancer due to its association with clinical parameters and with a clinically validated gene signature.


Detalles Bibliográficos
2018
Cancer
DNA methylation
Metastasis
MiR-886
Nc886
Prostate
TCGA
Tumor suppressor
Vault RNA
Vtrna2-1
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/22074
Acceso abierto
Licencia Creative Commons Atribución (CC –BY 4.0)
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author Fort Canobra, Rafael S
author2 Mathó, Cecilia
Geraldo, Murilo Vieira
Ottati Braselli, María Carolina
Yamashita, A. S.
Saito, K. C.
Leite, K. R. M.
Méndez, M.
Maedo, N.
Méndez, L.
Garat, Beatriz
Kimura, E. T.
Sotelo Silveira, José Roberto
Duhagon, María Ana
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author_facet Fort Canobra, Rafael S
Mathó, Cecilia
Geraldo, Murilo Vieira
Ottati Braselli, María Carolina
Yamashita, A. S.
Saito, K. C.
Leite, K. R. M.
Méndez, M.
Maedo, N.
Méndez, L.
Garat, Beatriz
Kimura, E. T.
Sotelo Silveira, José Roberto
Duhagon, María Ana
author_role author
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dc.contributor.filiacion.es.fl_str_mv Fort Canobra, Rafael S. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica
Mathó, Cecilia. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica
Ottati Braselli, M. Carolina. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica
Garat, Beatriz. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
Sotelo Silveira, José Roberto. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. IIBCE
Duhagon, María Ana. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
dc.creator.none.fl_str_mv Fort Canobra, Rafael S
Mathó, Cecilia
Geraldo, Murilo Vieira
Ottati Braselli, María Carolina
Yamashita, A. S.
Saito, K. C.
Leite, K. R. M.
Méndez, M.
Maedo, N.
Méndez, L.
Garat, Beatriz
Kimura, E. T.
Sotelo Silveira, José Roberto
Duhagon, María Ana
dc.date.accessioned.none.fl_str_mv 2019-10-02T22:14:44Z
dc.date.available.none.fl_str_mv 2019-10-02T22:14:44Z
dc.date.issued.es.fl_str_mv 2018
dc.date.submitted.es.fl_str_mv 20191001
dc.description.abstract.none.fl_txt_mv Background: Nc886 is a 102 bp non-coding RNA transcript initially classified as a microRNA precursor (Pre-miR-886), later as a divergent homologue of the vault RNAs (vtRNA 2-1) and more recently as a novel type of RNA (nc886). Although nc886/vtRNA2-1/Pre-miR-886 identity is still controversial, it was shown to be epigenetically controlled, presenting both tumor suppressor and oncogenic function in different cancers. Here, we study for the first time the role of nc886 in prostate cancer. Methods: Nc886 promoter methylation status and its correlation with patient clinical parameters or DNMTs levels were evaluated in TCGA and specific GEO prostate tissue datasets. Nc886 level was measured by RT-qPCR to compare normal/neoplastic prostate cells from radical prostatectomies and cell lines, and to assess nc886 response to demethylating agents. The effect of nc886 recovery in cell proliferation (in vitro and in vivo) and invasion (in vitro) was evaluated using lentiviral transduced DU145 and LNCaP cell lines. The association between the expression of nc886 and selected genes was analyzed in the TCGA-PRAD cohort. Results: Nc886 promoter methylation increases in tumor vs. normal prostate tissue, as well as in metastatic vs. normal prostate tissue. Additionally, nc886 promoter methylation correlates with prostate cancer clinical staging, including biochemical recurrence, Clinical T-value and Gleason score. Nc886 transcript is downregulated in tumor vs. normal tissue -in agreement with its promoter methylation status- and increases upon demethylating treatment. In functional studies, the overexpression of nc886 in the LNCaP and DU145 cell line leads to a decreased in vitro cell proliferation and invasion, as well as a reduced in vivo cell growth in NUDE-mice tumor xenografts. Finally, nc886 expression associates with the prostate cancer cell cycle progression gene signature in TCGA-PRAD. Conclusions: Our data suggest a tumor suppressor role for nc886 in the prostate, whose expression is epigenetically silenced in cancer leading to an increase in cell proliferation and invasion. Nc886 might hold clinical value in prostate cancer due to its association with clinical parameters and with a clinically validated gene signature.
dc.format.mimetype.es.fl_str_mv application/pdf
dc.identifier.citation.es.fl_str_mv Fort, R., et al. Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth. BMC Cancer, 2018, 18 (1), art. no. 127. doi: 10.1186/s12885-018-4049-7
dc.identifier.doi.es.fl_str_mv 10.1186/s12885-018-4049-7
dc.identifier.issn.es.fl_str_mv 1471-2407
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/22074
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv BioMed Central Ltd.
dc.relation.ispartof.es.fl_str_mv BMC Cancer, 2018, 18 (1), art. no. 127
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC –BY 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Cancer
DNA methylation
Metastasis
MiR-886
Nc886
Prostate
TCGA
Tumor suppressor
Vault RNA
Vtrna2-1
dc.title.none.fl_str_mv Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Background: Nc886 is a 102 bp non-coding RNA transcript initially classified as a microRNA precursor (Pre-miR-886), later as a divergent homologue of the vault RNAs (vtRNA 2-1) and more recently as a novel type of RNA (nc886). Although nc886/vtRNA2-1/Pre-miR-886 identity is still controversial, it was shown to be epigenetically controlled, presenting both tumor suppressor and oncogenic function in different cancers. Here, we study for the first time the role of nc886 in prostate cancer. Methods: Nc886 promoter methylation status and its correlation with patient clinical parameters or DNMTs levels were evaluated in TCGA and specific GEO prostate tissue datasets. Nc886 level was measured by RT-qPCR to compare normal/neoplastic prostate cells from radical prostatectomies and cell lines, and to assess nc886 response to demethylating agents. The effect of nc886 recovery in cell proliferation (in vitro and in vivo) and invasion (in vitro) was evaluated using lentiviral transduced DU145 and LNCaP cell lines. The association between the expression of nc886 and selected genes was analyzed in the TCGA-PRAD cohort. Results: Nc886 promoter methylation increases in tumor vs. normal prostate tissue, as well as in metastatic vs. normal prostate tissue. Additionally, nc886 promoter methylation correlates with prostate cancer clinical staging, including biochemical recurrence, Clinical T-value and Gleason score. Nc886 transcript is downregulated in tumor vs. normal tissue -in agreement with its promoter methylation status- and increases upon demethylating treatment. In functional studies, the overexpression of nc886 in the LNCaP and DU145 cell line leads to a decreased in vitro cell proliferation and invasion, as well as a reduced in vivo cell growth in NUDE-mice tumor xenografts. Finally, nc886 expression associates with the prostate cancer cell cycle progression gene signature in TCGA-PRAD. Conclusions: Our data suggest a tumor suppressor role for nc886 in the prostate, whose expression is epigenetically silenced in cancer leading to an increase in cell proliferation and invasion. Nc886 might hold clinical value in prostate cancer due to its association with clinical parameters and with a clinically validated gene signature.
eu_rights_str_mv openAccess
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id COLIBRI_670dfaa58a6907d193d2cddb1abd2737
identifier_str_mv Fort, R., et al. Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth. BMC Cancer, 2018, 18 (1), art. no. 127. doi: 10.1186/s12885-018-4049-7
1471-2407
10.1186/s12885-018-4049-7
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publishDate 2018
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC –BY 4.0)
spelling Fort Canobra, Rafael S. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaMathó, Cecilia. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaOttati Braselli, M. Carolina. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química BiológicaGarat, Beatriz. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaSotelo Silveira, José Roberto. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. IIBCEDuhagon, María Ana. Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología2019-10-02T22:14:44Z2019-10-02T22:14:44Z201820191001Fort, R., et al. Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth. BMC Cancer, 2018, 18 (1), art. no. 127. doi: 10.1186/s12885-018-4049-71471-2407https://hdl.handle.net/20.500.12008/2207410.1186/s12885-018-4049-7Background: Nc886 is a 102 bp non-coding RNA transcript initially classified as a microRNA precursor (Pre-miR-886), later as a divergent homologue of the vault RNAs (vtRNA 2-1) and more recently as a novel type of RNA (nc886). Although nc886/vtRNA2-1/Pre-miR-886 identity is still controversial, it was shown to be epigenetically controlled, presenting both tumor suppressor and oncogenic function in different cancers. Here, we study for the first time the role of nc886 in prostate cancer. Methods: Nc886 promoter methylation status and its correlation with patient clinical parameters or DNMTs levels were evaluated in TCGA and specific GEO prostate tissue datasets. Nc886 level was measured by RT-qPCR to compare normal/neoplastic prostate cells from radical prostatectomies and cell lines, and to assess nc886 response to demethylating agents. The effect of nc886 recovery in cell proliferation (in vitro and in vivo) and invasion (in vitro) was evaluated using lentiviral transduced DU145 and LNCaP cell lines. The association between the expression of nc886 and selected genes was analyzed in the TCGA-PRAD cohort. Results: Nc886 promoter methylation increases in tumor vs. normal prostate tissue, as well as in metastatic vs. normal prostate tissue. Additionally, nc886 promoter methylation correlates with prostate cancer clinical staging, including biochemical recurrence, Clinical T-value and Gleason score. Nc886 transcript is downregulated in tumor vs. normal tissue -in agreement with its promoter methylation status- and increases upon demethylating treatment. In functional studies, the overexpression of nc886 in the LNCaP and DU145 cell line leads to a decreased in vitro cell proliferation and invasion, as well as a reduced in vivo cell growth in NUDE-mice tumor xenografts. Finally, nc886 expression associates with the prostate cancer cell cycle progression gene signature in TCGA-PRAD. Conclusions: Our data suggest a tumor suppressor role for nc886 in the prostate, whose expression is epigenetically silenced in cancer leading to an increase in cell proliferation and invasion. Nc886 might hold clinical value in prostate cancer due to its association with clinical parameters and with a clinically validated gene signature.Made available in DSpace on 2019-10-02T22:14:44Z (GMT). No. of bitstreams: 5 101186s1288501840497.pdf: 1490848 bytes, checksum: 4e898a3e971e8ef3236f03620cee3dcd (MD5) license_text: 38297 bytes, checksum: 4fe6ac477f5a2df0424a5ff1a9bf000c (MD5) license_url: 44 bytes, checksum: a0ebbeafb9d2ec7cbb19d7137ebc392c (MD5) license_rdf: 8067 bytes, checksum: bc1bc9659a4a06e9516479a5adfd8b0e (MD5) license.txt: 4194 bytes, checksum: 7f2e2c17ef6585de66da58d1bfa8b5e1 (MD5) Previous issue date: 2018application/pdfenengBioMed Central Ltd.BMC Cancer, 2018, 18 (1), art. no. 127Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad De La República. (Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC –BY 4.0)CancerDNA methylationMetastasisMiR-886Nc886ProstateTCGATumor suppressorVault RNAVtrna2-1Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growthArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFort Canobra, Rafael SMathó, CeciliaGeraldo, Murilo VieiraOttati Braselli, María CarolinaYamashita, A. S.Saito, K. C.Leite, K. R. M.Méndez, M.Maedo, N.Méndez, L.Garat, BeatrizKimura, E. T.Sotelo Silveira, José RobertoDuhagon, María AnaLICENSElicense.txttext/plain4194http://localhost:8080/xmlui/bitstream/20.500.12008/22074/5/license.txt7f2e2c17ef6585de66da58d1bfa8b5e1MD55CC-LICENSElicense_textapplication/octet-stream38297http://localhost:8080/xmlui/bitstream/20.500.12008/22074/2/license_text4fe6ac477f5a2df0424a5ff1a9bf000cMD52license_urlapplication/octet-stream44http://localhost:8080/xmlui/bitstream/20.500.12008/22074/3/license_urla0ebbeafb9d2ec7cbb19d7137ebc392cMD53license_rdfapplication/octet-stream8067http://localhost:8080/xmlui/bitstream/20.500.12008/22074/4/license_rdfbc1bc9659a4a06e9516479a5adfd8b0eMD54ORIGINAL101186s1288501840497.pdfapplication/pdf1490848http://localhost:8080/xmlui/bitstream/20.500.12008/22074/1/101186s1288501840497.pdf4e898a3e971e8ef3236f03620cee3dcdMD5120.500.12008/220742022-01-25 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- Universidad de la Repúblicafalse
spellingShingle Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
Fort Canobra, Rafael S
Cancer
DNA methylation
Metastasis
MiR-886
Nc886
Prostate
TCGA
Tumor suppressor
Vault RNA
Vtrna2-1
status_str publishedVersion
title Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
title_full Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
title_fullStr Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
title_full_unstemmed Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
title_short Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
title_sort Nc886 is epigenetically repressed in prostate cancer and acts as a tumor suppressor through the inhibition of cell growth
topic Cancer
DNA methylation
Metastasis
MiR-886
Nc886
Prostate
TCGA
Tumor suppressor
Vault RNA
Vtrna2-1
url https://hdl.handle.net/20.500.12008/22074