An active regions approach for the segmentation of 3D biological tissue

Cardelino, Juan - Randall, Gregory - Bertalmío, Marcelo

Resumen:

Some of the most successful algorithms for the automated segmentation of images use an Active Regions approach, where a curve is evolved so as to maximize the disparity of its interior and exterior. But these techniques require the manual selection of several parameters, which make impractical the work with long image sequences or with a very dissimilar set of sequences. Unfortunately this is precisely the case with 3D biological image sequences. In this work we improve on previous Active Regions algorithms in two aspects: by introducing a way to compute and update the optimum weights for the different channels involved (color, texture, etc.) and by estimating if the moving curve has lost any object so as to launch a re-initialization step. Our method is shown to outperform previous approaches. Several examples of biological image sequences, quite long and different among themselves, are presented.


Detalles Bibliográficos
2005
Biological tissues
Image segmentation
Biology computing
PROCESAMIENTO de SEÑALES
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/21171
Acceso abierto
Licencia Creative Commons Atribución – No Comercial – Sin Derivadas (CC - By-NC-ND)
_version_ 1807522893348732928
author Cardelino, Juan
author2 Randall, Gregory
Bertalmío, Marcelo
author2_role author
author
author_facet Cardelino, Juan
Randall, Gregory
Bertalmío, Marcelo
author_role author
bitstream.checksum.fl_str_mv 6429389a7df7277b72b7924fdc7d47a9
d41d8cd98f00b204e9800998ecf8427e
4afdbb8c545fd630ea7db775da747b2f
d41d8cd98f00b204e9800998ecf8427e
f50b48a9dbd125422dd7e291eeb8866e
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
MD5
bitstream.url.fl_str_mv http://localhost:8080/xmlui/bitstream/20.500.12008/21171/5/license.txt
http://localhost:8080/xmlui/bitstream/20.500.12008/21171/2/license_text
http://localhost:8080/xmlui/bitstream/20.500.12008/21171/3/license_url
http://localhost:8080/xmlui/bitstream/20.500.12008/21171/4/license_rdf
http://localhost:8080/xmlui/bitstream/20.500.12008/21171/1/CRB05a.pdf
collection COLIBRI
dc.creator.none.fl_str_mv Cardelino, Juan
Randall, Gregory
Bertalmío, Marcelo
dc.date.accessioned.none.fl_str_mv 2019-07-03T16:35:51Z
dc.date.available.none.fl_str_mv 2019-07-03T16:35:51Z
dc.date.issued.es.fl_str_mv 2005
dc.date.submitted.es.fl_str_mv 20190703
dc.description.abstract.none.fl_txt_mv Some of the most successful algorithms for the automated segmentation of images use an Active Regions approach, where a curve is evolved so as to maximize the disparity of its interior and exterior. But these techniques require the manual selection of several parameters, which make impractical the work with long image sequences or with a very dissimilar set of sequences. Unfortunately this is precisely the case with 3D biological image sequences. In this work we improve on previous Active Regions algorithms in two aspects: by introducing a way to compute and update the optimum weights for the different channels involved (color, texture, etc.) and by estimating if the moving curve has lost any object so as to launch a re-initialization step. Our method is shown to outperform previous approaches. Several examples of biological image sequences, quite long and different among themselves, are presented.
dc.description.es.fl_txt_mv Trabajo presentado en IEEE International Conference on Image, Genova, Italia, 2005
dc.identifier.citation.es.fl_str_mv Cardelino, J, Randall, G, Bertalmío, M. An active regions approach for the segmentation of 3D biological tissue [Preprint] Publicado en Proceedings of the IEEE International Conference on Image Processing, Genova, Italia, 2005. doi 10.1109/ICIP.2005.1529741
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/21171
dc.language.iso.none.fl_str_mv en
eng
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución – No Comercial – Sin Derivadas (CC - By-NC-ND)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.en.fl_str_mv Biological tissues
Image segmentation
Biology computing
dc.subject.other.es.fl_str_mv PROCESAMIENTO de SEÑALES
dc.title.none.fl_str_mv An active regions approach for the segmentation of 3D biological tissue
dc.type.en.fl_str_mv Preprint
dc.type.none.fl_str_mv info:eu-repo/semantics/preprint
dc.type.version.none.fl_str_mv info:eu-repo/semantics/submittedVersion
description Trabajo presentado en IEEE International Conference on Image, Genova, Italia, 2005
eu_rights_str_mv openAccess
format preprint
id COLIBRI_4ff7d94c9d4b0ccdc00a071af9ea91b3
identifier_str_mv Cardelino, J, Randall, G, Bertalmío, M. An active regions approach for the segmentation of 3D biological tissue [Preprint] Publicado en Proceedings of the IEEE International Conference on Image Processing, Genova, Italia, 2005. doi 10.1109/ICIP.2005.1529741
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
language eng
language_invalid_str_mv en
network_acronym_str COLIBRI
network_name_str COLIBRI
oai_identifier_str oai:colibri.udelar.edu.uy:20.500.12008/21171
publishDate 2005
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución – No Comercial – Sin Derivadas (CC - By-NC-ND)
spelling 2019-07-03T16:35:51Z2019-07-03T16:35:51Z200520190703Cardelino, J, Randall, G, Bertalmío, M. An active regions approach for the segmentation of 3D biological tissue [Preprint] Publicado en Proceedings of the IEEE International Conference on Image Processing, Genova, Italia, 2005. doi 10.1109/ICIP.2005.1529741https://hdl.handle.net/20.500.12008/21171Trabajo presentado en IEEE International Conference on Image, Genova, Italia, 2005Some of the most successful algorithms for the automated segmentation of images use an Active Regions approach, where a curve is evolved so as to maximize the disparity of its interior and exterior. But these techniques require the manual selection of several parameters, which make impractical the work with long image sequences or with a very dissimilar set of sequences. Unfortunately this is precisely the case with 3D biological image sequences. In this work we improve on previous Active Regions algorithms in two aspects: by introducing a way to compute and update the optimum weights for the different channels involved (color, texture, etc.) and by estimating if the moving curve has lost any object so as to launch a re-initialization step. Our method is shown to outperform previous approaches. Several examples of biological image sequences, quite long and different among themselves, are presented.Made available in DSpace on 2019-07-03T16:35:51Z (GMT). No. of bitstreams: 5 CRB05a.pdf: 476589 bytes, checksum: f50b48a9dbd125422dd7e291eeb8866e (MD5) license_text: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) license_url: 49 bytes, checksum: 4afdbb8c545fd630ea7db775da747b2f (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) license.txt: 4267 bytes, checksum: 6429389a7df7277b72b7924fdc7d47a9 (MD5) Previous issue date: 2005enengLas obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad De La República. (Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución – No Comercial – Sin Derivadas (CC - By-NC-ND)Biological tissuesImage segmentationBiology computingPROCESAMIENTO de SEÑALESAn active regions approach for the segmentation of 3D biological tissuePreprintinfo:eu-repo/semantics/preprintinfo:eu-repo/semantics/submittedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaCardelino, JuanRandall, GregoryBertalmío, MarceloProcesamiento de SeñalesTratamiento de ImágenesLICENSElicense.txttext/plain4267http://localhost:8080/xmlui/bitstream/20.500.12008/21171/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_textapplication/octet-stream0http://localhost:8080/xmlui/bitstream/20.500.12008/21171/2/license_textd41d8cd98f00b204e9800998ecf8427eMD52license_urlapplication/octet-stream49http://localhost:8080/xmlui/bitstream/20.500.12008/21171/3/license_url4afdbb8c545fd630ea7db775da747b2fMD53license_rdfapplication/octet-stream0http://localhost:8080/xmlui/bitstream/20.500.12008/21171/4/license_rdfd41d8cd98f00b204e9800998ecf8427eMD54ORIGINALCRB05a.pdfapplication/pdf476589http://localhost:8080/xmlui/bitstream/20.500.12008/21171/1/CRB05a.pdff50b48a9dbd125422dd7e291eeb8866eMD5120.500.12008/211712024-07-24 17:25:45.596oai:colibri.udelar.edu.uy:20.500.12008/21171VGVybWlub3MgeSBjb25kaWNpb25lcyByZWxhdGl2YXMgYWwgZGVwb3NpdG8gZGUgb2JyYXMKCgpMYXMgb2JyYXMgZGVwb3NpdGFkYXMgZW4gZWwgUmVwb3NpdG9yaW8gc2UgcmlnZW4gcG9yIGxhIE9yZGVuYW56YSBkZSBsb3MgRGVyZWNob3MgZGUgbGEgUHJvcGllZGFkIEludGVsZWN0dWFsICBkZSBsYSBVbml2ZXJzaWRhZCBEZSBMYSBSZXDDumJsaWNhLiAoUmVzLiBOwrogOTEgZGUgQy5ELkMuIGRlIDgvSUlJLzE5OTQg4oCTIEQuTy4gNy9JVi8xOTk0KSB5ICBwb3IgbGEgT3JkZW5hbnphIGRlbCBSZXBvc2l0b3JpbyBBYmllcnRvIGRlIGxhIFVuaXZlcnNpZGFkIGRlIGxhIFJlcMO6YmxpY2EgKFJlcy4gTsK6IDE2IGRlIEMuRC5DLiBkZSAwNy8xMC8yMDE0KS4gCgpBY2VwdGFuZG8gZWwgYXV0b3IgZXN0b3MgdMOpcm1pbm9zIHkgY29uZGljaW9uZXMgZGUgZGVww7NzaXRvIGVuIENPTElCUkksIGxhIFVuaXZlcnNpZGFkIGRlIFJlcMO6YmxpY2EgcHJvY2VkZXLDoSBhOiAgCgphKSBhcmNoaXZhciBtw6FzIGRlIHVuYSBjb3BpYSBkZSBsYSBvYnJhIGVuIGxvcyBzZXJ2aWRvcmVzIGRlIGxhIFVuaXZlcnNpZGFkIGEgbG9zIGVmZWN0b3MgZGUgZ2FyYW50aXphciBhY2Nlc28sIHNlZ3VyaWRhZCB5IHByZXNlcnZhY2nDs24KYikgY29udmVydGlyIGxhIG9icmEgYSBvdHJvcyBmb3JtYXRvcyBzaSBmdWVyYSBuZWNlc2FyaW8gIHBhcmEgZmFjaWxpdGFyIHN1IHByZXNlcnZhY2nDs24geSBhY2Nlc2liaWxpZGFkIHNpbiBhbHRlcmFyIHN1IGNvbnRlbmlkby4KYykgcmVhbGl6YXIgbGEgY29tdW5pY2FjacOzbiBww7pibGljYSB5IGRpc3BvbmVyIGVsIGFjY2VzbyBsaWJyZSB5IGdyYXR1aXRvIGEgdHJhdsOpcyBkZSBJbnRlcm5ldCBtZWRpYW50ZSBsYSBwdWJsaWNhY2nDs24gZGUgbGEgb2JyYSBiYWpvIGxhIGxpY2VuY2lhIENyZWF0aXZlIENvbW1vbnMgc2VsZWNjaW9uYWRhIHBvciBlbCBwcm9waW8gYXV0b3IuCgoKRW4gY2FzbyBxdWUgZWwgYXV0b3IgaGF5YSBkaWZ1bmRpZG8geSBkYWRvIGEgcHVibGljaWRhZCBhIGxhIG9icmEgZW4gZm9ybWEgcHJldmlhLCAgcG9kcsOhIHNvbGljaXRhciB1biBwZXLDrW9kbyBkZSBlbWJhcmdvIHNvYnJlIGxhIGRpc3BvbmliaWxpZGFkIHDDumJsaWNhIGRlIGxhIG1pc21hLCBlbCBjdWFsIGNvbWVuemFyw6EgYSBwYXJ0aXIgZGUgbGEgYWNlcHRhY2nDs24gZGUgZXN0ZSBkb2N1bWVudG8geSBoYXN0YSBsYSBmZWNoYSBxdWUgaW5kaXF1ZSAuCgpFbCBhdXRvciBhc2VndXJhIHF1ZSBsYSBvYnJhIG5vIGluZnJpZ2UgbmluZ8O6biBkZXJlY2hvIHNvYnJlIHRlcmNlcm9zLCB5YSBzZWEgZGUgcHJvcGllZGFkIGludGVsZWN0dWFsIG8gY3VhbHF1aWVyIG90cm8uCgpFbCBhdXRvciBnYXJhbnRpemEgcXVlIHNpIGVsIGRvY3VtZW50byBjb250aWVuZSBtYXRlcmlhbGVzIGRlIGxvcyBjdWFsZXMgbm8gdGllbmUgbG9zIGRlcmVjaG9zIGRlIGF1dG9yLCAgaGEgb2J0ZW5pZG8gZWwgcGVybWlzbyBkZWwgcHJvcGlldGFyaW8gZGUgbG9zIGRlcmVjaG9zIGRlIGF1dG9yLCB5IHF1ZSBlc2UgbWF0ZXJpYWwgY3V5b3MgZGVyZWNob3Mgc29uIGRlIHRlcmNlcm9zIGVzdMOhIGNsYXJhbWVudGUgaWRlbnRpZmljYWRvIHkgcmVjb25vY2lkbyBlbiBlbCB0ZXh0byBvIGNvbnRlbmlkbyBkZWwgZG9jdW1lbnRvIGRlcG9zaXRhZG8gZW4gZWwgUmVwb3NpdG9yaW8uCgpFbiBvYnJhcyBkZSBhdXRvcsOtYSBtw7psdGlwbGUgL3NlIHByZXN1bWUvIHF1ZSBlbCBhdXRvciBkZXBvc2l0YW50ZSBkZWNsYXJhIHF1ZSBoYSByZWNhYmFkbyBlbCBjb25zZW50aW1pZW50byBkZSB0b2RvcyBsb3MgYXV0b3JlcyBwYXJhIHB1YmxpY2FybGEgZW4gZWwgUmVwb3NpdG9yaW8sIHNpZW5kbyDDqXN0ZSBlbCDDum5pY28gcmVzcG9uc2FibGUgZnJlbnRlIGEgY3VhbHF1aWVyIHRpcG8gZGUgcmVjbGFtYWNpw7NuIGRlIGxvcyBvdHJvcyBjb2F1dG9yZXMuCgpFbCBhdXRvciBzZXLDoSByZXNwb25zYWJsZSBkZWwgY29udGVuaWRvIGRlIGxvcyBkb2N1bWVudG9zIHF1ZSBkZXBvc2l0YS4gTGEgVURFTEFSIG5vIHNlcsOhIHJlc3BvbnNhYmxlIHBvciBsYXMgZXZlbnR1YWxlcyB2aW9sYWNpb25lcyBhbCBkZXJlY2hvIGRlIHByb3BpZWRhZCBpbnRlbGVjdHVhbCBlbiBxdWUgcHVlZGEgaW5jdXJyaXIgZWwgYXV0b3IuCgpBbnRlIGN1YWxxdWllciBkZW51bmNpYSBkZSB2aW9sYWNpw7NuIGRlIGRlcmVjaG9zIGRlIHByb3BpZWRhZCBpbnRlbGVjdHVhbCwgbGEgVURFTEFSICBhZG9wdGFyw6EgdG9kYXMgbGFzIG1lZGlkYXMgbmVjZXNhcmlhcyBwYXJhIGV2aXRhciBsYSBjb250aW51YWNpw7NuIGRlIGRpY2hhIGluZnJhY2Npw7NuLCBsYXMgcXVlIHBvZHLDoW4gaW5jbHVpciBlbCByZXRpcm8gZGVsIGFjY2VzbyBhIGxvcyBjb250ZW5pZG9zIHkvbyBtZXRhZGF0b3MgZGVsIGRvY3VtZW50byByZXNwZWN0aXZvLgoKTGEgb2JyYSBzZSBwb25kcsOhIGEgZGlzcG9zaWNpw7NuIGRlbCBww7pibGljbyBhIHRyYXbDqXMgZGUgbGFzIGxpY2VuY2lhcyBDcmVhdGl2ZSBDb21tb25zLCBlbCBhdXRvciBwb2Ryw6Egc2VsZWNjaW9uYXIgdW5hIGRlIGxhcyA2IGxpY2VuY2lhcyBkaXNwb25pYmxlczoKCgpBdHJpYnVjacOzbiAoQ0MgLSBCeSk6IFBlcm1pdGUgdXNhciBsYSBvYnJhIHkgZ2VuZXJhciBvYnJhcyBkZXJpdmFkYXMsIGluY2x1c28gY29uIGZpbmVzIGNvbWVyY2lhbGVzLCBzaWVtcHJlIHF1ZSBzZSByZWNvbm96Y2EgYWwgYXV0b3IuCgpBdHJpYnVjacOzbiDigJMgQ29tcGFydGlyIElndWFsIChDQyAtIEJ5LVNBKTogUGVybWl0ZSB1c2FyIGxhIG9icmEgeSBnZW5lcmFyIG9icmFzIGRlcml2YWRhcywgaW5jbHVzbyBjb24gZmluZXMgY29tZXJjaWFsZXMsIHBlcm8gbGEgZGlzdHJpYnVjacOzbiBkZSBsYXMgb2JyYXMgZGVyaXZhZGFzIGRlYmUgaGFjZXJzZSBtZWRpYW50ZSB1bmEgbGljZW5jaWEgaWTDqW50aWNhIGEgbGEgZGUgbGEgb2JyYSBvcmlnaW5hbCwgcmVjb25vY2llbmRvIGEgbG9zIGF1dG9yZXMuCgpBdHJpYnVjacOzbiDigJMgTm8gQ29tZXJjaWFsIChDQyAtIEJ5LU5DKTogUGVybWl0ZSB1c2FyIGxhIG9icmEgeSBnZW5lcmFyIG9icmFzIGRlcml2YWRhcywgc2llbXByZSB5IGN1YW5kbyBlc29zIHVzb3Mgbm8gdGVuZ2FuIGZpbmVzIGNvbWVyY2lhbGVzLCByZWNvbm9jaWVuZG8gYWwgYXV0b3IuCgpBdHJpYnVjacOzbiDigJMgU2luIERlcml2YWRhcyAoQ0MgLSBCeS1ORCk6IFBlcm1pdGUgZWwgdXNvIGRlIGxhIG9icmEsIGluY2x1c28gY29uIGZpbmVzIGNvbWVyY2lhbGVzLCBwZXJvIG5vIHNlIHBlcm1pdGUgZ2VuZXJhciBvYnJhcyBkZXJpdmFkYXMsIGRlYmllbmRvIHJlY29ub2NlciBhbCBhdXRvci4KCkF0cmlidWNpw7NuIOKAkyBObyBDb21lcmNpYWwg4oCTIENvbXBhcnRpciBJZ3VhbCAoQ0Mg4oCTIEJ5LU5DLVNBKTogUGVybWl0ZSB1c2FyIGxhIG9icmEgeSBnZW5lcmFyIG9icmFzIGRlcml2YWRhcywgc2llbXByZSB5IGN1YW5kbyBlc29zIHVzb3Mgbm8gdGVuZ2FuIGZpbmVzIGNvbWVyY2lhbGVzIHkgbGEgZGlzdHJpYnVjacOzbiBkZSBsYXMgb2JyYXMgZGVyaXZhZGFzIHNlIGhhZ2EgbWVkaWFudGUgbGljZW5jaWEgaWTDqW50aWNhIGEgbGEgZGUgbGEgb2JyYSBvcmlnaW5hbCwgcmVjb25vY2llbmRvIGEgbG9zIGF1dG9yZXMuCgpBdHJpYnVjacOzbiDigJMgTm8gQ29tZXJjaWFsIOKAkyBTaW4gRGVyaXZhZGFzIChDQyAtIEJ5LU5DLU5EKTogUGVybWl0ZSB1c2FyIGxhIG9icmEsIHBlcm8gbm8gc2UgcGVybWl0ZSBnZW5lcmFyIG9icmFzIGRlcml2YWRhcyB5IG5vIHNlIHBlcm1pdGUgdXNvIGNvbiBmaW5lcyBjb21lcmNpYWxlcywgZGViaWVuZG8gcmVjb25vY2VyIGFsIGF1dG9yLgoKTG9zIHVzb3MgcHJldmlzdG9zIGVuIGxhcyBsaWNlbmNpYXMgaW5jbHV5ZW4gbGEgZW5hamVuYWNpw7NuLCByZXByb2R1Y2Npw7NuLCBjb211bmljYWNpw7NuLCBwdWJsaWNhY2nDs24sIGRpc3RyaWJ1Y2nDs24geSBwdWVzdGEgYSBkaXNwb3NpY2nDs24gZGVsIHDDumJsaWNvLiBMYSBjcmVhY2nDs24gZGUgb2JyYXMgZGVyaXZhZGFzIGluY2x1eWUgbGEgYWRhcHRhY2nDs24sIHRyYWR1Y2Npw7NuIHkgZWwgcmVtaXguCgpDdWFuZG8gc2Ugc2VsZWNjaW9uZSB1bmEgbGljZW5jaWEgcXVlIGhhYmlsaXRlIHVzb3MgY29tZXJjaWFsZXMsIGVsIGRlcMOzc2l0byBkZWJlcsOhIHNlciBhY29tcGHDsWFkbyBkZWwgYXZhbCBkZWwgamVyYXJjYSBtw6F4aW1vIGRlbCBTZXJ2aWNpbyBjb3JyZXNwb25kaWVudGUuCg==Universidadhttps://udelar.edu.uy/https://www.colibri.udelar.edu.uy/oai/requestmabel.seroubian@seciu.edu.uyUruguayopendoar:47712024-07-25T14:32:57.604782COLIBRI - Universidad de la Repúblicafalse
spellingShingle An active regions approach for the segmentation of 3D biological tissue
Cardelino, Juan
Biological tissues
Image segmentation
Biology computing
PROCESAMIENTO de SEÑALES
status_str submittedVersion
title An active regions approach for the segmentation of 3D biological tissue
title_full An active regions approach for the segmentation of 3D biological tissue
title_fullStr An active regions approach for the segmentation of 3D biological tissue
title_full_unstemmed An active regions approach for the segmentation of 3D biological tissue
title_short An active regions approach for the segmentation of 3D biological tissue
title_sort An active regions approach for the segmentation of 3D biological tissue
topic Biological tissues
Image segmentation
Biology computing
PROCESAMIENTO de SEÑALES
url https://hdl.handle.net/20.500.12008/21171