The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms
Resumen:
Image‐based plant phenotyping involves the quantitative determination of complex plant traits using image analysis. One important parameter to assess is the degree of greenness of photosynthetic tissues, as it may reflect plant health, development, or the pigment‐depleting impact of stressful environments. Various attempts have been made to quantify leaf greenness scores, but each has shown restricted utility and efficacy. Often, these methods overlooked the precision needed to represent greenness differences. Here, we developed an improved method, the ‘Green Index’ (GI), to quantitatively score the greenness of photosynthetic tissues and track smooth transitions in seedling greening during de‐etiolation. GI is open‐source, uses widely available RGB values from image pixels, and does not require advanced computational skills (available at www.foodandplantbiology.com). We describe the conception of the GI formula and evaluate its superiority over existing methods using both literature‐derived and new datasets. Furthermore, we demonstrated the utility of the GI in addressing common issues encountered in assessing plant phenotype in biology experiments, underscoring its potential as a reliable and accessible tool. Based on greenness, GI quantitatively discriminates leaf health, developmental stages, and stress sensitivity. We also report that GI significantly correlates with chlorophyll content, and can thus serve as a proxy for tracking chlorophyll trends.
| 2025 | |
| CSIC: I + D_2020_21 | |
|
Chlorophyll Leaf Phenotyping RGB Stress marker |
|
| Inglés | |
| Universidad de la República | |
| COLIBRI | |
| https://hdl.handle.net/20.500.12008/54142 | |
| Acceso abierto | |
| Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
| _version_ | 1872864702964432896 |
|---|---|
| author | Signorelli, Santiago |
| author2 | Casaretto De Gregorio, Esteban Eduardo Etchemendy‐Gamundi, Magdalena Bentancor, Marcel Millar, Harvey |
| author2_role | author author author author |
| author_facet | Signorelli, Santiago Casaretto De Gregorio, Esteban Eduardo Etchemendy‐Gamundi, Magdalena Bentancor, Marcel Millar, Harvey |
| author_role | author |
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| collection | COLIBRI |
| dc.contributor.filiacion.none.fl_str_mv | Signorelli Santiago, Universidad de la República (Uruguay). Facultad de Agronomía. Casaretto De Gregorio Esteban Eduardo, Universidad de la República (Uruguay). Facultad de Agronomía. Etchemendy‐Gamundi Magdalena, Universidad de la República (Uruguay). Facultad de Agronomía. Bentancor Marcel, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica. Millar Harvey |
| dc.creator.none.fl_str_mv | Signorelli, Santiago Casaretto De Gregorio, Esteban Eduardo Etchemendy‐Gamundi, Magdalena Bentancor, Marcel Millar, Harvey |
| dc.date.accessioned.none.fl_str_mv | 2026-03-26T13:40:05Z |
| dc.date.available.none.fl_str_mv | 2026-03-26T13:40:05Z |
| dc.date.issued.none.fl_str_mv | 2025 |
| dc.description.abstract.none.fl_txt_mv | Image‐based plant phenotyping involves the quantitative determination of complex plant traits using image analysis. One important parameter to assess is the degree of greenness of photosynthetic tissues, as it may reflect plant health, development, or the pigment‐depleting impact of stressful environments. Various attempts have been made to quantify leaf greenness scores, but each has shown restricted utility and efficacy. Often, these methods overlooked the precision needed to represent greenness differences. Here, we developed an improved method, the ‘Green Index’ (GI), to quantitatively score the greenness of photosynthetic tissues and track smooth transitions in seedling greening during de‐etiolation. GI is open‐source, uses widely available RGB values from image pixels, and does not require advanced computational skills (available at www.foodandplantbiology.com). We describe the conception of the GI formula and evaluate its superiority over existing methods using both literature‐derived and new datasets. Furthermore, we demonstrated the utility of the GI in addressing common issues encountered in assessing plant phenotype in biology experiments, underscoring its potential as a reliable and accessible tool. Based on greenness, GI quantitatively discriminates leaf health, developmental stages, and stress sensitivity. We also report that GI significantly correlates with chlorophyll content, and can thus serve as a proxy for tracking chlorophyll trends. |
| dc.description.sponsorship.none.fl_txt_mv | CSIC: I + D_2020_21 |
| dc.format.extent.es.fl_str_mv | 17 h |
| dc.format.mimetype.es.fl_str_mv | application/pdf |
| dc.identifier.citation.es.fl_str_mv | Signorelli, S, Casaretto De Gregorio, E, Etchemendy‐Gamundi, M [y otros autores]. "The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms". Plant Cell & Environment. [en línea] 2025, 48(11): 8027–8043. 17 h. DOI: 10.1111/pce.70102 |
| dc.identifier.doi.none.fl_str_mv | 10.1111/pce.70102 |
| dc.identifier.issn.none.fl_str_mv | 1365-3040 |
| dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/54142 |
| dc.language.iso.none.fl_str_mv | en eng |
| dc.publisher.es.fl_str_mv | Wiley |
| dc.relation.none.fl_str_mv | Plant Cell & Environment, 2025, 48(11): 8027–8043. |
| dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
| dc.subject.es.fl_str_mv | Chlorophyll Leaf Phenotyping RGB Stress marker |
| dc.title.none.fl_str_mv | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| dc.type.es.fl_str_mv | Artículo |
| dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
| dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
| description | Image‐based plant phenotyping involves the quantitative determination of complex plant traits using image analysis. One important parameter to assess is the degree of greenness of photosynthetic tissues, as it may reflect plant health, development, or the pigment‐depleting impact of stressful environments. Various attempts have been made to quantify leaf greenness scores, but each has shown restricted utility and efficacy. Often, these methods overlooked the precision needed to represent greenness differences. Here, we developed an improved method, the ‘Green Index’ (GI), to quantitatively score the greenness of photosynthetic tissues and track smooth transitions in seedling greening during de‐etiolation. GI is open‐source, uses widely available RGB values from image pixels, and does not require advanced computational skills (available at www.foodandplantbiology.com). We describe the conception of the GI formula and evaluate its superiority over existing methods using both literature‐derived and new datasets. Furthermore, we demonstrated the utility of the GI in addressing common issues encountered in assessing plant phenotype in biology experiments, underscoring its potential as a reliable and accessible tool. Based on greenness, GI quantitatively discriminates leaf health, developmental stages, and stress sensitivity. We also report that GI significantly correlates with chlorophyll content, and can thus serve as a proxy for tracking chlorophyll trends. |
| eu_rights_str_mv | openAccess |
| format | article |
| id | COLIBRI_3f8329701da4adaae96706df7f5f582b |
| identifier_str_mv | Signorelli, S, Casaretto De Gregorio, E, Etchemendy‐Gamundi, M [y otros autores]. "The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms". Plant Cell & Environment. [en línea] 2025, 48(11): 8027–8043. 17 h. DOI: 10.1111/pce.70102 1365-3040 10.1111/pce.70102 |
| instacron_str | Universidad de la República |
| institution | Universidad de la República |
| instname_str | Universidad de la República |
| language | eng |
| language_invalid_str_mv | en |
| network_acronym_str | COLIBRI |
| network_name_str | COLIBRI |
| oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/54142 |
| publishDate | 2025 |
| reponame_str | COLIBRI |
| repository.mail.fl_str_mv | karina.camps@seciu.edu.uy |
| repository.name.fl_str_mv | COLIBRI - Universidad de la República |
| repository_id_str | 4771 |
| rights_invalid_str_mv | Licencia Creative Commons Atribución - No Comercial (CC - By-NC 4.0) |
| spelling | Signorelli Santiago, Universidad de la República (Uruguay). Facultad de Agronomía.Casaretto De Gregorio Esteban Eduardo, Universidad de la República (Uruguay). Facultad de Agronomía.Etchemendy‐Gamundi Magdalena, Universidad de la República (Uruguay). Facultad de Agronomía.Bentancor Marcel, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Química Biológica.Millar Harvey2026-03-26T13:40:05Z2026-03-26T13:40:05Z2025Signorelli, S, Casaretto De Gregorio, E, Etchemendy‐Gamundi, M [y otros autores]. "The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms". Plant Cell & Environment. [en línea] 2025, 48(11): 8027–8043. 17 h. DOI: 10.1111/pce.701021365-3040https://hdl.handle.net/20.500.12008/5414210.1111/pce.70102Image‐based plant phenotyping involves the quantitative determination of complex plant traits using image analysis. One important parameter to assess is the degree of greenness of photosynthetic tissues, as it may reflect plant health, development, or the pigment‐depleting impact of stressful environments. Various attempts have been made to quantify leaf greenness scores, but each has shown restricted utility and efficacy. Often, these methods overlooked the precision needed to represent greenness differences. Here, we developed an improved method, the ‘Green Index’ (GI), to quantitatively score the greenness of photosynthetic tissues and track smooth transitions in seedling greening during de‐etiolation. GI is open‐source, uses widely available RGB values from image pixels, and does not require advanced computational skills (available at www.foodandplantbiology.com). We describe the conception of the GI formula and evaluate its superiority over existing methods using both literature‐derived and new datasets. Furthermore, we demonstrated the utility of the GI in addressing common issues encountered in assessing plant phenotype in biology experiments, underscoring its potential as a reliable and accessible tool. Based on greenness, GI quantitatively discriminates leaf health, developmental stages, and stress sensitivity. We also report that GI significantly correlates with chlorophyll content, and can thus serve as a proxy for tracking chlorophyll trends.Submitted by Pintos Natalia (nataliapintosmvd@gmail.com) on 2026-03-26T13:22:02Z No. of bitstreams: 2 license_rdf: 26648 bytes, checksum: e9507f17d292a045f834ee111e4d098b (MD5) 10.1111.pce.70102.pdf: 9288123 bytes, checksum: 7853d5054099b5b0741f8a838da08fa8 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2026-03-26T13:28:35Z (GMT) No. of bitstreams: 2 license_rdf: 26648 bytes, checksum: e9507f17d292a045f834ee111e4d098b (MD5) 10.1111.pce.70102.pdf: 9288123 bytes, checksum: 7853d5054099b5b0741f8a838da08fa8 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2026-03-26T13:40:05Z (GMT). No. of bitstreams: 2 license_rdf: 26648 bytes, checksum: e9507f17d292a045f834ee111e4d098b (MD5) 10.1111.pce.70102.pdf: 9288123 bytes, checksum: 7853d5054099b5b0741f8a838da08fa8 (MD5) Previous issue date: 2025CSIC: I + D_2020_2117 happlication/pdfenengWileyPlant Cell & Environment, 2025, 48(11): 8027–8043.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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públicahttps://udelar.edu.uy/https://www.colibri.udelar.edu.uy/oai/requestkarina.camps@seciu.edu.uyUruguayopendoar:47712026-03-26T13:40:05COLIBRI - Universidad de la Repúblicafalse |
| spellingShingle | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms Signorelli, Santiago Chlorophyll Leaf Phenotyping RGB Stress marker |
| status_str | publishedVersion |
| title | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| title_full | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| title_fullStr | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| title_full_unstemmed | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| title_short | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| title_sort | The Green Index: a widely accessible method to quantify the degree of greenness of photosynthetic organisms |
| topic | Chlorophyll Leaf Phenotyping RGB Stress marker |
| url | https://hdl.handle.net/20.500.12008/54142 |