Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach

Morel, María A. - Iriarte, Andrés - Jara Tellechea, Eugenio Salvador - Musto, Héctor - Castro-Sowinski, Susana

Resumen:

Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology.


Detalles Bibliográficos
2016
ANII: FMV_3_2011_1_6089
Delftia
Plant-growth promotion
Bioremediation
Comparative genomic
Plant-microbe interaction
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/34322
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Morel, María A.
author2 Iriarte, Andrés
Jara Tellechea, Eugenio Salvador
Musto, Héctor
Castro-Sowinski, Susana
author2_role author
author
author
author
author_facet Morel, María A.
Iriarte, Andrés
Jara Tellechea, Eugenio Salvador
Musto, Héctor
Castro-Sowinski, Susana
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Morel María A., IIBCE
Iriarte Andrés, Universidad de la República (Uruguay). Facultad de Medicina
Jara Tellechea Eugenio Salvador, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Musto Héctor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
Castro-Sowinski Susana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología
dc.creator.none.fl_str_mv Morel, María A.
Iriarte, Andrés
Jara Tellechea, Eugenio Salvador
Musto, Héctor
Castro-Sowinski, Susana
dc.date.accessioned.none.fl_str_mv 2022-10-25T14:18:59Z
dc.date.available.none.fl_str_mv 2022-10-25T14:18:59Z
dc.date.issued.none.fl_str_mv 2016
dc.description.abstract.none.fl_txt_mv Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology.
dc.description.sponsorship.none.fl_txt_mv ANII: FMV_3_2011_1_6089
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dc.identifier.citation.es.fl_str_mv Morel, M, Iriarte, A, Jara Tellechea, E, [y otros autores]. "Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach". AIMS Bioengineering. [en línea] 2016, 3(2): 156-175. 20 h.
dc.identifier.doi.none.fl_str_mv 10.3934/bioeng.2016.2.156
dc.identifier.issn.none.fl_str_mv 2375-1495
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/34322
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv AIMS Press
dc.relation.ispartof.es.fl_str_mv AIMS Bioengineering, 2016, 3(2): 156-175
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Delftia
Plant-growth promotion
Bioremediation
Comparative genomic
Plant-microbe interaction
dc.title.none.fl_str_mv Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology.
eu_rights_str_mv openAccess
format article
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identifier_str_mv Morel, M, Iriarte, A, Jara Tellechea, E, [y otros autores]. "Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach". AIMS Bioengineering. [en línea] 2016, 3(2): 156-175. 20 h.
2375-1495
10.3934/bioeng.2016.2.156
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
language eng
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publishDate 2016
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Morel María A., IIBCEIriarte Andrés, Universidad de la República (Uruguay). Facultad de MedicinaJara Tellechea Eugenio Salvador, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Musto Héctor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaCastro-Sowinski Susana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología2022-10-25T14:18:59Z2022-10-25T14:18:59Z2016Morel, M, Iriarte, A, Jara Tellechea, E, [y otros autores]. "Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach". AIMS Bioengineering. [en línea] 2016, 3(2): 156-175. 20 h.2375-1495https://hdl.handle.net/20.500.12008/3432210.3934/bioeng.2016.2.156Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology.Submitted by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-10-25T13:55:57Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.3934bioeng.2016.2.156.pdf: 861314 bytes, checksum: de3815052dffe28406146af8ad1ff1ca (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-10-25T13:56:26Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.3934bioeng.2016.2.156.pdf: 861314 bytes, checksum: de3815052dffe28406146af8ad1ff1ca (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-10-25T14:18:59Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.3934bioeng.2016.2.156.pdf: 861314 bytes, checksum: de3815052dffe28406146af8ad1ff1ca (MD5) Previous issue date: 2016ANII: FMV_3_2011_1_608920 happlication/pdfenengAIMS PressAIMS Bioengineering, 2016, 3(2): 156-175Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)DelftiaPlant-growth promotionBioremediationComparative genomicPlant-microbe interactionRevealing the biotechnological potential of Delftia sp. 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- Universidad de la Repúblicafalse
spellingShingle Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
Morel, María A.
Delftia
Plant-growth promotion
Bioremediation
Comparative genomic
Plant-microbe interaction
status_str publishedVersion
title Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
title_full Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
title_fullStr Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
title_full_unstemmed Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
title_short Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
title_sort Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
topic Delftia
Plant-growth promotion
Bioremediation
Comparative genomic
Plant-microbe interaction
url https://hdl.handle.net/20.500.12008/34322