Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach
Resumen:
Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology.
2016 | |
ANII: FMV_3_2011_1_6089 | |
Delftia Plant-growth promotion Bioremediation Comparative genomic Plant-microbe interaction |
|
Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/34322 | |
Acceso abierto | |
Licencia Creative Commons Atribución (CC - By 4.0) |
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---|---|
author | Morel, María A. |
author2 | Iriarte, Andrés Jara Tellechea, Eugenio Salvador Musto, Héctor Castro-Sowinski, Susana |
author2_role | author author author author |
author_facet | Morel, María A. Iriarte, Andrés Jara Tellechea, Eugenio Salvador Musto, Héctor Castro-Sowinski, Susana |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | Morel María A., IIBCE Iriarte Andrés, Universidad de la República (Uruguay). Facultad de Medicina Jara Tellechea Eugenio Salvador, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Musto Héctor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología Castro-Sowinski Susana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología |
dc.creator.none.fl_str_mv | Morel, María A. Iriarte, Andrés Jara Tellechea, Eugenio Salvador Musto, Héctor Castro-Sowinski, Susana |
dc.date.accessioned.none.fl_str_mv | 2022-10-25T14:18:59Z |
dc.date.available.none.fl_str_mv | 2022-10-25T14:18:59Z |
dc.date.issued.none.fl_str_mv | 2016 |
dc.description.abstract.none.fl_txt_mv | Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology. |
dc.description.sponsorship.none.fl_txt_mv | ANII: FMV_3_2011_1_6089 |
dc.format.extent.es.fl_str_mv | 20 h |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Morel, M, Iriarte, A, Jara Tellechea, E, [y otros autores]. "Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach". AIMS Bioengineering. [en línea] 2016, 3(2): 156-175. 20 h. |
dc.identifier.doi.none.fl_str_mv | 10.3934/bioeng.2016.2.156 |
dc.identifier.issn.none.fl_str_mv | 2375-1495 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/34322 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | AIMS Press |
dc.relation.ispartof.es.fl_str_mv | AIMS Bioengineering, 2016, 3(2): 156-175 |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Delftia Plant-growth promotion Bioremediation Comparative genomic Plant-microbe interaction |
dc.title.none.fl_str_mv | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_2e6e8410b340d2090f05297a17262179 |
identifier_str_mv | Morel, M, Iriarte, A, Jara Tellechea, E, [y otros autores]. "Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach". AIMS Bioengineering. [en línea] 2016, 3(2): 156-175. 20 h. 2375-1495 10.3934/bioeng.2016.2.156 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/34322 |
publishDate | 2016 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
spelling | Morel María A., IIBCEIriarte Andrés, Universidad de la República (Uruguay). Facultad de MedicinaJara Tellechea Eugenio Salvador, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Musto Héctor, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de BiologíaCastro-Sowinski Susana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología2022-10-25T14:18:59Z2022-10-25T14:18:59Z2016Morel, M, Iriarte, A, Jara Tellechea, E, [y otros autores]. "Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach". AIMS Bioengineering. [en línea] 2016, 3(2): 156-175. 20 h.2375-1495https://hdl.handle.net/20.500.12008/3432210.3934/bioeng.2016.2.156Delftia sp. JD2 is a chromium-resistant bacterium that reduces Cr(VI) to Cr(III), accumulates Pb(II), produces the phytohormone indole-3-acetic acid and siderophores, and increases the plant growth performance of rhizobia in co-inoculation experiments. We aimed to analyze the biotechnological potential of JD2 using a genomic approach. JD2 has a genome of 6.76Mb, with 6,051 predicted protein coding sequences and 93 RNA genes (tRNA and rRNA). The indole-acetamide pathway was identified as responsible for the synthesis of indole-3-acetic acid. The genetic information involved in chromium resistance (the gene cluster, chrBACF,) was found. At least 40 putative genes encoding for TonB-dependent receptors, probably involved in the utilization of siderophores and biopolymers, and genes for the synthesis, maturation, exportation and uptake of pyoverdine, and acquisition of Fe-pyochelin and Fe-enterobactin were also identified. The information also suggests that JD2 produce polyhydroxybutyrate, a carbon reserve polymer commonly used for manufacturing petrochemical free bioplastics. In addition, JD2 may degrade lignin-derived aromatic compounds to 2-pyrone-4,6-dicarboxylate, a molecule used in the bio-based polymer industry. Finally, a comparative genomic analysis of JD2, Delftia sp. Cs1-4 and Delftia acidovorans SPH-1 is also discussed. The present work provides insights into the physiology and genetics of a microorganism with many potential uses in biotechnology.Submitted by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-10-25T13:55:57Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.3934bioeng.2016.2.156.pdf: 861314 bytes, checksum: de3815052dffe28406146af8ad1ff1ca (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-10-25T13:56:26Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.3934bioeng.2016.2.156.pdf: 861314 bytes, checksum: de3815052dffe28406146af8ad1ff1ca (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-10-25T14:18:59Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.3934bioeng.2016.2.156.pdf: 861314 bytes, checksum: de3815052dffe28406146af8ad1ff1ca (MD5) Previous issue date: 2016ANII: FMV_3_2011_1_608920 happlication/pdfenengAIMS PressAIMS Bioengineering, 2016, 3(2): 156-175Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)DelftiaPlant-growth promotionBioremediationComparative genomicPlant-microbe interactionRevealing the biotechnological potential of Delftia sp. 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- Universidad de la Repúblicafalse |
spellingShingle | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach Morel, María A. Delftia Plant-growth promotion Bioremediation Comparative genomic Plant-microbe interaction |
status_str | publishedVersion |
title | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
title_full | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
title_fullStr | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
title_full_unstemmed | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
title_short | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
title_sort | Revealing the biotechnological potential of Delftia sp. JD2 by a genomic approach |
topic | Delftia Plant-growth promotion Bioremediation Comparative genomic Plant-microbe interaction |
url | https://hdl.handle.net/20.500.12008/34322 |