Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics
Resumen:
Trypanosoma cruzi is the etiological agent for Chagas disease, a neglected parasitic disease in Latin America. Gene transcription control governs the eukaryotic cell replication but is absent in trypanosomatids; thus, it must be replaced by posttranscriptional regulatory events. We investigated the entrance into the T. cruzi replicative cycle using ribosome profiling and proteomics on G1/S epimastigote cultures synchronized with hydroxyurea. We identified 1,784 translationally regulated genes (change > 2, false-discovery rate [FDR] < 0.05) and 653 differentially expressed proteins (change > 1.5, FDR < 0.05), respectively. A major translational remodeling accompanied by an extensive proteome change is found, while the transcriptome remains largely unperturbed at the replicative entrance of the cell cycle. The differentially expressed genes comprise specific cell cycle processes, confirming previous findings while revealing candidate cell cycle regulators that undergo previously unnoticed translational regulation. Clusters of genes showing a coordinated regulation at translation and protein abundance share related biological functions such as cytoskeleton organization and mitochondrial metabolism; thus, they may represent posttranscriptional regulons. The translatome and proteome of the coregulated clusters change in both coupled and uncoupled directions, suggesting that complex cross talk between the two processes is required to achieve adequate protein levels of different regulons. This is the first simultaneous assessment of the transcriptome, translatome, and proteome of trypanosomatids, which represent a paradigm for the absence of transcriptional control. The findings suggest that gene expression chronology along the T. cruzi cell cycle is controlled mainly by translatome and proteome changes coordinated using different mechanisms for specific gene groups.
2021 | |
Chagas’ disease Trypanosoma Trypanosoma cruzi Cell cycle Cell proliferation Genomics Mass spectrometry Posttranscription Proteomics Regulon Ribosome profiling Translational control |
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Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/34955 | |
Acceso abierto | |
Licencia Creative Commons Atribución (CC - By 4.0) |
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author | Chávez, Santiago |
author2 | Urbaniak, Michael D Benz, Corinna Smircich, Pablo Garat, Beatriz Sotelo Silveira, José Roberto Duhagon, María Ana |
author2_role | author author author author author author |
author_facet | Chávez, Santiago Urbaniak, Michael D Benz, Corinna Smircich, Pablo Garat, Beatriz Sotelo Silveira, José Roberto Duhagon, María Ana |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | Chávez Santiago, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Urbaniak Michael D Benz Corinna Smircich Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Garat Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Sotelo Silveira José Roberto, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Duhagon María Ana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. |
dc.creator.none.fl_str_mv | Chávez, Santiago Urbaniak, Michael D Benz, Corinna Smircich, Pablo Garat, Beatriz Sotelo Silveira, José Roberto Duhagon, María Ana |
dc.date.accessioned.none.fl_str_mv | 2022-11-22T11:56:51Z |
dc.date.available.none.fl_str_mv | 2022-11-22T11:56:51Z |
dc.date.issued.none.fl_str_mv | 2021 |
dc.description.abstract.none.fl_txt_mv | Trypanosoma cruzi is the etiological agent for Chagas disease, a neglected parasitic disease in Latin America. Gene transcription control governs the eukaryotic cell replication but is absent in trypanosomatids; thus, it must be replaced by posttranscriptional regulatory events. We investigated the entrance into the T. cruzi replicative cycle using ribosome profiling and proteomics on G1/S epimastigote cultures synchronized with hydroxyurea. We identified 1,784 translationally regulated genes (change > 2, false-discovery rate [FDR] < 0.05) and 653 differentially expressed proteins (change > 1.5, FDR < 0.05), respectively. A major translational remodeling accompanied by an extensive proteome change is found, while the transcriptome remains largely unperturbed at the replicative entrance of the cell cycle. The differentially expressed genes comprise specific cell cycle processes, confirming previous findings while revealing candidate cell cycle regulators that undergo previously unnoticed translational regulation. Clusters of genes showing a coordinated regulation at translation and protein abundance share related biological functions such as cytoskeleton organization and mitochondrial metabolism; thus, they may represent posttranscriptional regulons. The translatome and proteome of the coregulated clusters change in both coupled and uncoupled directions, suggesting that complex cross talk between the two processes is required to achieve adequate protein levels of different regulons. This is the first simultaneous assessment of the transcriptome, translatome, and proteome of trypanosomatids, which represent a paradigm for the absence of transcriptional control. The findings suggest that gene expression chronology along the T. cruzi cell cycle is controlled mainly by translatome and proteome changes coordinated using different mechanisms for specific gene groups. |
dc.format.extent.es.fl_str_mv | 21 h |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Chávez, S, Urbaniak, M, Benz, C [y otros autores] "Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics". mSphere. [en línea] 2021, 6(5): e00366-21. 21 h. DOI: 10.1128/mSphere.00366-21. |
dc.identifier.doi.none.fl_str_mv | 10.1128/mSphere.00366-21 |
dc.identifier.issn.none.fl_str_mv | 2379-5042 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/34955 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | American Society for Microbiology |
dc.relation.ispartof.es.fl_str_mv | mSphere, 2021, 6(5): e00366-21. |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Chagas’ disease Trypanosoma Trypanosoma cruzi Cell cycle Cell proliferation Genomics Mass spectrometry Posttranscription Proteomics Regulon Ribosome profiling Translational control |
dc.title.none.fl_str_mv | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Trypanosoma cruzi is the etiological agent for Chagas disease, a neglected parasitic disease in Latin America. Gene transcription control governs the eukaryotic cell replication but is absent in trypanosomatids; thus, it must be replaced by posttranscriptional regulatory events. We investigated the entrance into the T. cruzi replicative cycle using ribosome profiling and proteomics on G1/S epimastigote cultures synchronized with hydroxyurea. We identified 1,784 translationally regulated genes (change > 2, false-discovery rate [FDR] < 0.05) and 653 differentially expressed proteins (change > 1.5, FDR < 0.05), respectively. A major translational remodeling accompanied by an extensive proteome change is found, while the transcriptome remains largely unperturbed at the replicative entrance of the cell cycle. The differentially expressed genes comprise specific cell cycle processes, confirming previous findings while revealing candidate cell cycle regulators that undergo previously unnoticed translational regulation. Clusters of genes showing a coordinated regulation at translation and protein abundance share related biological functions such as cytoskeleton organization and mitochondrial metabolism; thus, they may represent posttranscriptional regulons. The translatome and proteome of the coregulated clusters change in both coupled and uncoupled directions, suggesting that complex cross talk between the two processes is required to achieve adequate protein levels of different regulons. This is the first simultaneous assessment of the transcriptome, translatome, and proteome of trypanosomatids, which represent a paradigm for the absence of transcriptional control. The findings suggest that gene expression chronology along the T. cruzi cell cycle is controlled mainly by translatome and proteome changes coordinated using different mechanisms for specific gene groups. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_250d36516c9af526cbb7c589c6516848 |
identifier_str_mv | Chávez, S, Urbaniak, M, Benz, C [y otros autores] "Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics". mSphere. [en línea] 2021, 6(5): e00366-21. 21 h. DOI: 10.1128/mSphere.00366-21. 2379-5042 10.1128/mSphere.00366-21 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/34955 |
publishDate | 2021 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
spelling | Chávez Santiago, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Urbaniak Michael DBenz CorinnaSmircich Pablo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Garat Beatriz, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Sotelo Silveira José Roberto, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Duhagon María Ana, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.2022-11-22T11:56:51Z2022-11-22T11:56:51Z2021Chávez, S, Urbaniak, M, Benz, C [y otros autores] "Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics". mSphere. [en línea] 2021, 6(5): e00366-21. 21 h. DOI: 10.1128/mSphere.00366-21.2379-5042https://hdl.handle.net/20.500.12008/3495510.1128/mSphere.00366-21Trypanosoma cruzi is the etiological agent for Chagas disease, a neglected parasitic disease in Latin America. Gene transcription control governs the eukaryotic cell replication but is absent in trypanosomatids; thus, it must be replaced by posttranscriptional regulatory events. We investigated the entrance into the T. cruzi replicative cycle using ribosome profiling and proteomics on G1/S epimastigote cultures synchronized with hydroxyurea. We identified 1,784 translationally regulated genes (change > 2, false-discovery rate [FDR] < 0.05) and 653 differentially expressed proteins (change > 1.5, FDR < 0.05), respectively. A major translational remodeling accompanied by an extensive proteome change is found, while the transcriptome remains largely unperturbed at the replicative entrance of the cell cycle. The differentially expressed genes comprise specific cell cycle processes, confirming previous findings while revealing candidate cell cycle regulators that undergo previously unnoticed translational regulation. Clusters of genes showing a coordinated regulation at translation and protein abundance share related biological functions such as cytoskeleton organization and mitochondrial metabolism; thus, they may represent posttranscriptional regulons. The translatome and proteome of the coregulated clusters change in both coupled and uncoupled directions, suggesting that complex cross talk between the two processes is required to achieve adequate protein levels of different regulons. This is the first simultaneous assessment of the transcriptome, translatome, and proteome of trypanosomatids, which represent a paradigm for the absence of transcriptional control. The findings suggest that gene expression chronology along the T. cruzi cell cycle is controlled mainly by translatome and proteome changes coordinated using different mechanisms for specific gene groups.Submitted by Parodi Mónica (mparodi@fcien.edu.uy) on 2022-11-21T14:42:49Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 101128mSphere0036621.pdf: 2849253 bytes, checksum: caf1eb2cbb15bc5722e5b498b10d192c (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-11-21T18:27:24Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 101128mSphere0036621.pdf: 2849253 bytes, checksum: caf1eb2cbb15bc5722e5b498b10d192c (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-11-22T11:56:51Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 101128mSphere0036621.pdf: 2849253 bytes, checksum: caf1eb2cbb15bc5722e5b498b10d192c (MD5) Previous issue date: 202121 happlication/pdfenengAmerican Society for MicrobiologymSphere, 2021, 6(5): e00366-21.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)Chagas’ diseaseTrypanosomaTrypanosoma cruziCell cycleCell proliferationGenomicsMass spectrometryPosttranscriptionProteomicsRegulonRibosome profilingTranslational controlExtensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-OmicsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaChávez, SantiagoUrbaniak, Michael DBenz, CorinnaSmircich, PabloGarat, BeatrizSotelo Silveira, José RobertoDuhagon, María AnaLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/34955/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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- Universidad de la Repúblicafalse |
spellingShingle | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics Chávez, Santiago Chagas’ disease Trypanosoma Trypanosoma cruzi Cell cycle Cell proliferation Genomics Mass spectrometry Posttranscription Proteomics Regulon Ribosome profiling Translational control |
status_str | publishedVersion |
title | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
title_full | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
title_fullStr | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
title_full_unstemmed | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
title_short | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
title_sort | Extensive translational regulation through the proliferative transition of Trypanosoma cruzi revealed by Multi-Omics |
topic | Chagas’ disease Trypanosoma Trypanosoma cruzi Cell cycle Cell proliferation Genomics Mass spectrometry Posttranscription Proteomics Regulon Ribosome profiling Translational control |
url | https://hdl.handle.net/20.500.12008/34955 |