First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America

Salazar González, María Cecilia - Antelo Gutiérrez, Verónica Beatriz - Vieytes, Mariela - Dávila, Cristina - Grill, Fabio - Galiana, Antonio - Iraola, Gregorio

Resumen:

Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic.


Detalles Bibliográficos
2022
OXA-48
Carbapenem resistance
Klebsiella pneumonia
Multi-drug resistance
Whole-genome sequencing
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/38461
Acceso abierto
Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
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author Salazar González, María Cecilia
author2 Antelo Gutiérrez, Verónica Beatriz
Vieytes, Mariela
Dávila, Cristina
Grill, Fabio
Galiana, Antonio
Iraola, Gregorio
author2_role author
author
author
author
author
author
author_facet Salazar González, María Cecilia
Antelo Gutiérrez, Verónica Beatriz
Vieytes, Mariela
Dávila, Cristina
Grill, Fabio
Galiana, Antonio
Iraola, Gregorio
author_role author
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dc.contributor.filiacion.none.fl_str_mv Salazar González María Cecilia, Instituto Pasteur (Montevideo).
Antelo Gutiérrez Verónica Beatriz, Instituto Pasteur (Montevideo).
Vieytes Mariela
Dávila Cristina
Grill Fabio
Galiana Antonio
Iraola Gregorio, Instituto Pasteur (Montevideo).
dc.creator.none.fl_str_mv Salazar González, María Cecilia
Antelo Gutiérrez, Verónica Beatriz
Vieytes, Mariela
Dávila, Cristina
Grill, Fabio
Galiana, Antonio
Iraola, Gregorio
dc.date.accessioned.none.fl_str_mv 2023-07-27T13:01:58Z
dc.date.available.none.fl_str_mv 2023-07-27T13:01:58Z
dc.date.issued.none.fl_str_mv 2022
dc.description.abstract.none.fl_txt_mv Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic.
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dc.identifier.citation.es.fl_str_mv Salazar González, M, Antelo Gutiérrez, V, Vieytes, M, [y otros autores]. "First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America". Journal of Global Antimicrobial Resistance. [en línea] 2022, 30: 480-484. 5 h. DOI: 10.1016/j.jgar.2022.08.005
dc.identifier.doi.none.fl_str_mv 10.1016/j.jgar.2022.08.005
dc.identifier.issn.none.fl_str_mv 2213-7165
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/38461
dc.language.iso.none.fl_str_mv en_US
eng
dc.publisher.es.fl_str_mv Elsevier Ltd
dc.relation.ispartof.es.fl_str_mv Journal of Global Antimicrobial Resistance, 2022, 30: 480-484.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv OXA-48
Carbapenem resistance
Klebsiella pneumonia
Multi-drug resistance
Whole-genome sequencing
dc.title.none.fl_str_mv First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic.
eu_rights_str_mv openAccess
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identifier_str_mv Salazar González, M, Antelo Gutiérrez, V, Vieytes, M, [y otros autores]. "First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America". Journal of Global Antimicrobial Resistance. [en línea] 2022, 30: 480-484. 5 h. DOI: 10.1016/j.jgar.2022.08.005
2213-7165
10.1016/j.jgar.2022.08.005
instacron_str Universidad de la República
institution Universidad de la República
instname_str Universidad de la República
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repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
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rights_invalid_str_mv Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0)
spelling Salazar González María Cecilia, Instituto Pasteur (Montevideo).Antelo Gutiérrez Verónica Beatriz, Instituto Pasteur (Montevideo).Vieytes MarielaDávila CristinaGrill FabioGaliana AntonioIraola Gregorio, Instituto Pasteur (Montevideo).2023-07-27T13:01:58Z2023-07-27T13:01:58Z2022Salazar González, M, Antelo Gutiérrez, V, Vieytes, M, [y otros autores]. "First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America". Journal of Global Antimicrobial Resistance. [en línea] 2022, 30: 480-484. 5 h. DOI: 10.1016/j.jgar.2022.08.0052213-7165https://hdl.handle.net/20.500.12008/3846110.1016/j.jgar.2022.08.005Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic.Submitted by Farías Verónica (vfarias@fcien.edu.uy) on 2023-07-26T18:06:21Z No. of bitstreams: 2 license_rdf: 23149 bytes, checksum: 1996b8461bc290aef6a27d78c67b6b52 (MD5) 101016.jgar202208005.pdf: 1187212 bytes, checksum: b95457c88b5d32146ec474dfe3f219a2 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-07-26T18:14:30Z (GMT) No. of bitstreams: 2 license_rdf: 23149 bytes, checksum: 1996b8461bc290aef6a27d78c67b6b52 (MD5) 101016.jgar202208005.pdf: 1187212 bytes, checksum: b95457c88b5d32146ec474dfe3f219a2 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-07-27T13:01:58Z (GMT). No. of bitstreams: 2 license_rdf: 23149 bytes, checksum: 1996b8461bc290aef6a27d78c67b6b52 (MD5) 101016.jgar202208005.pdf: 1187212 bytes, checksum: b95457c88b5d32146ec474dfe3f219a2 (MD5) Previous issue date: 20225 h.application/pdfen_USengElsevier LtdJournal of Global Antimicrobial Resistance, 2022, 30: 480-484.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse
spellingShingle First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
Salazar González, María Cecilia
OXA-48
Carbapenem resistance
Klebsiella pneumonia
Multi-drug resistance
Whole-genome sequencing
status_str publishedVersion
title First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
title_full First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
title_fullStr First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
title_full_unstemmed First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
title_short First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
title_sort First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
topic OXA-48
Carbapenem resistance
Klebsiella pneumonia
Multi-drug resistance
Whole-genome sequencing
url https://hdl.handle.net/20.500.12008/38461