First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America
Resumen:
Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic.
2022 | |
OXA-48 Carbapenem resistance Klebsiella pneumonia Multi-drug resistance Whole-genome sequencing |
|
Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/38461 | |
Acceso abierto | |
Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0) |
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---|---|
author | Salazar González, María Cecilia |
author2 | Antelo Gutiérrez, Verónica Beatriz Vieytes, Mariela Dávila, Cristina Grill, Fabio Galiana, Antonio Iraola, Gregorio |
author2_role | author author author author author author |
author_facet | Salazar González, María Cecilia Antelo Gutiérrez, Verónica Beatriz Vieytes, Mariela Dávila, Cristina Grill, Fabio Galiana, Antonio Iraola, Gregorio |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | Salazar González María Cecilia, Instituto Pasteur (Montevideo). Antelo Gutiérrez Verónica Beatriz, Instituto Pasteur (Montevideo). Vieytes Mariela Dávila Cristina Grill Fabio Galiana Antonio Iraola Gregorio, Instituto Pasteur (Montevideo). |
dc.creator.none.fl_str_mv | Salazar González, María Cecilia Antelo Gutiérrez, Verónica Beatriz Vieytes, Mariela Dávila, Cristina Grill, Fabio Galiana, Antonio Iraola, Gregorio |
dc.date.accessioned.none.fl_str_mv | 2023-07-27T13:01:58Z |
dc.date.available.none.fl_str_mv | 2023-07-27T13:01:58Z |
dc.date.issued.none.fl_str_mv | 2022 |
dc.description.abstract.none.fl_txt_mv | Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic. |
dc.format.extent.es.fl_str_mv | 5 h. |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Salazar González, M, Antelo Gutiérrez, V, Vieytes, M, [y otros autores]. "First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America". Journal of Global Antimicrobial Resistance. [en línea] 2022, 30: 480-484. 5 h. DOI: 10.1016/j.jgar.2022.08.005 |
dc.identifier.doi.none.fl_str_mv | 10.1016/j.jgar.2022.08.005 |
dc.identifier.issn.none.fl_str_mv | 2213-7165 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/38461 |
dc.language.iso.none.fl_str_mv | en_US eng |
dc.publisher.es.fl_str_mv | Elsevier Ltd |
dc.relation.ispartof.es.fl_str_mv | Journal of Global Antimicrobial Resistance, 2022, 30: 480-484. |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | OXA-48 Carbapenem resistance Klebsiella pneumonia Multi-drug resistance Whole-genome sequencing |
dc.title.none.fl_str_mv | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic. |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_0c4bc29df24f0bd03d4ea332e70b3eed |
identifier_str_mv | Salazar González, M, Antelo Gutiérrez, V, Vieytes, M, [y otros autores]. "First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America". Journal of Global Antimicrobial Resistance. [en línea] 2022, 30: 480-484. 5 h. DOI: 10.1016/j.jgar.2022.08.005 2213-7165 10.1016/j.jgar.2022.08.005 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en_US |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/38461 |
publishDate | 2022 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución - No Comercial - Sin Derivadas (CC - By-NC-ND 4.0) |
spelling | Salazar González María Cecilia, Instituto Pasteur (Montevideo).Antelo Gutiérrez Verónica Beatriz, Instituto Pasteur (Montevideo).Vieytes MarielaDávila CristinaGrill FabioGaliana AntonioIraola Gregorio, Instituto Pasteur (Montevideo).2023-07-27T13:01:58Z2023-07-27T13:01:58Z2022Salazar González, M, Antelo Gutiérrez, V, Vieytes, M, [y otros autores]. "First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America". Journal of Global Antimicrobial Resistance. [en línea] 2022, 30: 480-484. 5 h. DOI: 10.1016/j.jgar.2022.08.0052213-7165https://hdl.handle.net/20.500.12008/3846110.1016/j.jgar.2022.08.005Objectives: The emergence and spread of carbapenem resistant clones is of major concern for global health. This study aimed to characterize the first detected Klebsiella pneumoniae ST15 harboring the epi- demic carbapenemase OXA-48 in South America. Methods: During a routine colonization screening with carbapenem-resistant bacteria, one K. pneumoniae strain (CGHM01) was isolated from the urine of a hospitalized patient suffering from a neurodegenera- tive disease in Uruguay. We used long-read whole-genome sequencing and a phylogenomic approach to characterize the emergence of K. pneumoniae CGHM01. Results: K. pneumoniae CGHM01 is a multi-drug resistant strain carrying an IncL/M plasmid that encodes the carbapenemase gene bla OXA-48 within the Tn1999.2 transposon. Also, it carries an IncR plasmid har- boring a class I integron with an array of antibiotic resistance genes including the extended-spectrum beta-lactamase bla CTX-M-15 . Two copies of bla CTX-M-15 were also inserted in different positions of the chro- mosome. CGHM01 belongs to a ST15 sublineage that likely originated in continental Spain around 2012. Conclusions: The asymptomatic carriage of this strain in the urinary tract warns of difficulties for detec- tion and reporting of emerging carbapenem-resistant clones in new geographic areas where these are not endemic.Submitted by Farías Verónica (vfarias@fcien.edu.uy) on 2023-07-26T18:06:21Z No. of bitstreams: 2 license_rdf: 23149 bytes, checksum: 1996b8461bc290aef6a27d78c67b6b52 (MD5) 101016.jgar202208005.pdf: 1187212 bytes, checksum: b95457c88b5d32146ec474dfe3f219a2 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2023-07-26T18:14:30Z (GMT) No. of bitstreams: 2 license_rdf: 23149 bytes, checksum: 1996b8461bc290aef6a27d78c67b6b52 (MD5) 101016.jgar202208005.pdf: 1187212 bytes, checksum: b95457c88b5d32146ec474dfe3f219a2 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2023-07-27T13:01:58Z (GMT). No. of bitstreams: 2 license_rdf: 23149 bytes, checksum: 1996b8461bc290aef6a27d78c67b6b52 (MD5) 101016.jgar202208005.pdf: 1187212 bytes, checksum: b95457c88b5d32146ec474dfe3f219a2 (MD5) Previous issue date: 20225 h.application/pdfen_USengElsevier LtdJournal of Global Antimicrobial Resistance, 2022, 30: 480-484.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. 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- Universidad de la Repúblicafalse |
spellingShingle | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America Salazar González, María Cecilia OXA-48 Carbapenem resistance Klebsiella pneumonia Multi-drug resistance Whole-genome sequencing |
status_str | publishedVersion |
title | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
title_full | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
title_fullStr | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
title_full_unstemmed | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
title_short | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
title_sort | First detection and origin of multi-drug resistant Klebsiella pneumoniae ST15 harboring OXA-48 in South America |
topic | OXA-48 Carbapenem resistance Klebsiella pneumonia Multi-drug resistance Whole-genome sequencing |
url | https://hdl.handle.net/20.500.12008/38461 |