Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells

Clusan, Léa - Percevault, Frederic - Jullion, Emmanuelle - Le Goff, Pascale - Tiffoche, Christophe - Fernández Calero, Tamara - Métivier, Raphaël - Marín Gutiérrez, Mónica - Pakdel, Farzad - Michel, Denis - Flouriot, Gilles

Resumen:

Oestrogen receptor-alpha (ERa) positivity is intimately associated with the development of hormone-dependent breast cancers. A major challenge in the treatment of these cancers is to understand and overcome the mechanisms of endocrine resistance. Recently, two distinct translation programmes using specific transfer RNA (tRNA) repertoires and codon usage frequencies were evidenced during cell proliferation and differentiation. Considering the phenotype switch of cancer cells to more proliferating and less-differentiated states, we can speculate that the changes in the tRNA pool and codon usage that likely occur make the ERa coding sequence no longer adapted, impacting translational rate, co-translational folding and the resulting functional properties of the protein. To verify this hypothesis, we generated an ERa synonymous coding sequence whose codon usage was optimized to the frequencies observed in genes expressed specifically in proliferating cells and then investigated the functional properties of the encoded receptor. We demonstrate that such a codon adaptation restores ERa activities to levels observed in differentiated cells, including: (a) an enhanced contribution exerted by transactivation function 1 (AF1) in ERa transcriptional activity; (b) enhanced interactions with nuclear receptor corepressor 1 and 2 [NCoR1 and NCoR2 (also known as SMRT) respectively], promoting repressive capability; and (c) reduced interactions with SRC proto-oncogene, nonreceptor tyrosine kinase (Src) and phosphoinositide 3-kinase (PI3K) p85 kinases, inhibiting MAPK and AKT signalling pathway.


Detalles Bibliográficos
2023
Breast cancer
Codon usage
Co-translational folding
Endocrine resistance
Oestrogen receptor alpha
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/43174
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Clusan, Léa
author2 Percevault, Frederic
Jullion, Emmanuelle
Le Goff, Pascale
Tiffoche, Christophe
Fernández Calero, Tamara
Métivier, Raphaël
Marín Gutiérrez, Mónica
Pakdel, Farzad
Michel, Denis
Flouriot, Gilles
author2_role author
author
author
author
author
author
author
author
author
author
author_facet Clusan, Léa
Percevault, Frederic
Jullion, Emmanuelle
Le Goff, Pascale
Tiffoche, Christophe
Fernández Calero, Tamara
Métivier, Raphaël
Marín Gutiérrez, Mónica
Pakdel, Farzad
Michel, Denis
Flouriot, Gilles
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Clusan Léa
Percevault Frederic
Jullion Emmanuelle
Le Goff Pascale
Tiffoche Christophe
Fernández Calero Tamara, Instituto Pasteur (Montevideo).
Métivier Raphaël
Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Pakdel Farzad
Michel Denis
Flouriot Gilles
dc.creator.none.fl_str_mv Clusan, Léa
Percevault, Frederic
Jullion, Emmanuelle
Le Goff, Pascale
Tiffoche, Christophe
Fernández Calero, Tamara
Métivier, Raphaël
Marín Gutiérrez, Mónica
Pakdel, Farzad
Michel, Denis
Flouriot, Gilles
dc.date.accessioned.none.fl_str_mv 2024-03-19T12:15:59Z
dc.date.available.none.fl_str_mv 2024-03-19T12:15:59Z
dc.date.issued.none.fl_str_mv 2023
dc.description.abstract.none.fl_txt_mv Oestrogen receptor-alpha (ERa) positivity is intimately associated with the development of hormone-dependent breast cancers. A major challenge in the treatment of these cancers is to understand and overcome the mechanisms of endocrine resistance. Recently, two distinct translation programmes using specific transfer RNA (tRNA) repertoires and codon usage frequencies were evidenced during cell proliferation and differentiation. Considering the phenotype switch of cancer cells to more proliferating and less-differentiated states, we can speculate that the changes in the tRNA pool and codon usage that likely occur make the ERa coding sequence no longer adapted, impacting translational rate, co-translational folding and the resulting functional properties of the protein. To verify this hypothesis, we generated an ERa synonymous coding sequence whose codon usage was optimized to the frequencies observed in genes expressed specifically in proliferating cells and then investigated the functional properties of the encoded receptor. We demonstrate that such a codon adaptation restores ERa activities to levels observed in differentiated cells, including: (a) an enhanced contribution exerted by transactivation function 1 (AF1) in ERa transcriptional activity; (b) enhanced interactions with nuclear receptor corepressor 1 and 2 [NCoR1 and NCoR2 (also known as SMRT) respectively], promoting repressive capability; and (c) reduced interactions with SRC proto-oncogene, nonreceptor tyrosine kinase (Src) and phosphoinositide 3-kinase (PI3K) p85 kinases, inhibiting MAPK and AKT signalling pathway.
dc.format.extent.es.fl_str_mv 22 h.
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dc.identifier.citation.es.fl_str_mv Clusan, L, Percevault, F, Jullion, E [y otros autores]. "Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells". Molecular Oncology. [en línea] 2023, 17(7): 1302–1323. 22 h. DOI: 10.1002/1878-0261.13399.
dc.identifier.doi.none.fl_str_mv 10.1002/1878-0261.13399
dc.identifier.issn.none.fl_str_mv 1878-0261
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/43174
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv FEBS
dc.relation.ispartof.es.fl_str_mv Molecular Oncology, 2023, 17(7): 1302–1323.
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Breast cancer
Codon usage
Co-translational folding
Endocrine resistance
Oestrogen receptor alpha
dc.title.none.fl_str_mv Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Oestrogen receptor-alpha (ERa) positivity is intimately associated with the development of hormone-dependent breast cancers. A major challenge in the treatment of these cancers is to understand and overcome the mechanisms of endocrine resistance. Recently, two distinct translation programmes using specific transfer RNA (tRNA) repertoires and codon usage frequencies were evidenced during cell proliferation and differentiation. Considering the phenotype switch of cancer cells to more proliferating and less-differentiated states, we can speculate that the changes in the tRNA pool and codon usage that likely occur make the ERa coding sequence no longer adapted, impacting translational rate, co-translational folding and the resulting functional properties of the protein. To verify this hypothesis, we generated an ERa synonymous coding sequence whose codon usage was optimized to the frequencies observed in genes expressed specifically in proliferating cells and then investigated the functional properties of the encoded receptor. We demonstrate that such a codon adaptation restores ERa activities to levels observed in differentiated cells, including: (a) an enhanced contribution exerted by transactivation function 1 (AF1) in ERa transcriptional activity; (b) enhanced interactions with nuclear receptor corepressor 1 and 2 [NCoR1 and NCoR2 (also known as SMRT) respectively], promoting repressive capability; and (c) reduced interactions with SRC proto-oncogene, nonreceptor tyrosine kinase (Src) and phosphoinositide 3-kinase (PI3K) p85 kinases, inhibiting MAPK and AKT signalling pathway.
eu_rights_str_mv openAccess
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identifier_str_mv Clusan, L, Percevault, F, Jullion, E [y otros autores]. "Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells". Molecular Oncology. [en línea] 2023, 17(7): 1302–1323. 22 h. DOI: 10.1002/1878-0261.13399.
1878-0261
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publishDate 2023
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repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
repository_id_str 4771
rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Clusan LéaPercevault FredericJullion EmmanuelleLe Goff PascaleTiffoche ChristopheFernández Calero Tamara, Instituto Pasteur (Montevideo).Métivier RaphaëlMarín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Pakdel FarzadMichel DenisFlouriot Gilles2024-03-19T12:15:59Z2024-03-19T12:15:59Z2023Clusan, L, Percevault, F, Jullion, E [y otros autores]. "Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells". Molecular Oncology. [en línea] 2023, 17(7): 1302–1323. 22 h. DOI: 10.1002/1878-0261.13399.1878-0261https://hdl.handle.net/20.500.12008/4317410.1002/1878-0261.13399Oestrogen receptor-alpha (ERa) positivity is intimately associated with the development of hormone-dependent breast cancers. A major challenge in the treatment of these cancers is to understand and overcome the mechanisms of endocrine resistance. Recently, two distinct translation programmes using specific transfer RNA (tRNA) repertoires and codon usage frequencies were evidenced during cell proliferation and differentiation. Considering the phenotype switch of cancer cells to more proliferating and less-differentiated states, we can speculate that the changes in the tRNA pool and codon usage that likely occur make the ERa coding sequence no longer adapted, impacting translational rate, co-translational folding and the resulting functional properties of the protein. To verify this hypothesis, we generated an ERa synonymous coding sequence whose codon usage was optimized to the frequencies observed in genes expressed specifically in proliferating cells and then investigated the functional properties of the encoded receptor. We demonstrate that such a codon adaptation restores ERa activities to levels observed in differentiated cells, including: (a) an enhanced contribution exerted by transactivation function 1 (AF1) in ERa transcriptional activity; (b) enhanced interactions with nuclear receptor corepressor 1 and 2 [NCoR1 and NCoR2 (also known as SMRT) respectively], promoting repressive capability; and (c) reduced interactions with SRC proto-oncogene, nonreceptor tyrosine kinase (Src) and phosphoinositide 3-kinase (PI3K) p85 kinases, inhibiting MAPK and AKT signalling pathway.Submitted by Pintos Natalia (nataliapintosmvd@gmail.com) on 2024-03-15T15:59:15Z No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.1002.1878-0261.13399.pdf: 1998299 bytes, checksum: 37d4ae2461b7d06ee387a8f8aecfe6a2 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2024-03-19T11:52:09Z (GMT) No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.1002.1878-0261.13399.pdf: 1998299 bytes, checksum: 37d4ae2461b7d06ee387a8f8aecfe6a2 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2024-03-19T12:15:59Z (GMT). No. of bitstreams: 2 license_rdf: 24251 bytes, checksum: 71ed42ef0a0b648670f707320be37b90 (MD5) 10.1002.1878-0261.13399.pdf: 1998299 bytes, checksum: 37d4ae2461b7d06ee387a8f8aecfe6a2 (MD5) Previous issue date: 202322 h.application/pdfenengFEBSMolecular Oncology, 2023, 17(7): 1302–1323.Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)Breast cancerCodon usageCo-translational foldingEndocrine resistanceOestrogen receptor alphaCodon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cellsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaClusan, LéaPercevault, FredericJullion, EmmanuelleLe Goff, PascaleTiffoche, ChristopheFernández Calero, TamaraMétivier, RaphaëlMarín Gutiérrez, MónicaPakdel, FarzadMichel, DenisFlouriot, GillesLICENSElicense.txtlicense.txttext/plain; charset=utf-84267http://localhost:8080/xmlui/bitstream/20.500.12008/43174/5/license.txt6429389a7df7277b72b7924fdc7d47a9MD55CC-LICENSElicense_urllicense_urltext/plain; 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- Universidad de la Repúblicafalse
spellingShingle Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
Clusan, Léa
Breast cancer
Codon usage
Co-translational folding
Endocrine resistance
Oestrogen receptor alpha
status_str publishedVersion
title Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
title_full Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
title_fullStr Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
title_full_unstemmed Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
title_short Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
title_sort Codon adaptation by synonymous mutations impacts the functional properties of the estrogen receptor-alpha protein in breast cancer cells
topic Breast cancer
Codon usage
Co-translational folding
Endocrine resistance
Oestrogen receptor alpha
url https://hdl.handle.net/20.500.12008/43174