Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
Resumen:
Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targets
2020 | |
Breast cancer EMT Luminal to basal transition MKL1/actin signaling pathway Metabolism adaptation Translation machinery Ribosome profiling Breast cancer stem cells |
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Inglés | |
Universidad de la República | |
COLIBRI | |
https://hdl.handle.net/20.500.12008/31741 | |
Acceso abierto | |
Licencia Creative Commons Atribución (CC - By 4.0) |
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author | Fernández Calero, Tamara |
author2 | Davyt Borthagaray, Marcos Perelmuter, Karen Chalar, Cora Bampi, G. Persson, H. Tosar Rovira, Juan Pablo Hafstað, V. Naya Monteverde, Hugo Mario Rovira, Carlos Bollati-Fogolín, Mariela Ehrlich, Ricardo Flouriot, Gilles Ignatova, Z. Marín Gutiérrez, Mónica |
author2_role | author author author author author author author author author author author author author author |
author_facet | Fernández Calero, Tamara Davyt Borthagaray, Marcos Perelmuter, Karen Chalar, Cora Bampi, G. Persson, H. Tosar Rovira, Juan Pablo Hafstað, V. Naya Monteverde, Hugo Mario Rovira, Carlos Bollati-Fogolín, Mariela Ehrlich, Ricardo Flouriot, Gilles Ignatova, Z. Marín Gutiérrez, Mónica |
author_role | author |
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collection | COLIBRI |
dc.contributor.filiacion.none.fl_str_mv | Fernández Calero Tamara, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Davyt Borthagaray Marcos, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Perelmuter Karen, Instituto Pasteur (Montevideo). Chalar Cora, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Bampi G. Persson H. Tosar Rovira Juan Pablo, IUniversidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Hafstað V. Naya Monteverde Hugo Mario, Instituto Pasteur (Montevideo). Rovira Carlos Bollati-Fogolín Mariela, InstitutoPasteur (Montevideo). Ehrlich Ricardo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. Flouriot Gilles Ignatova Z. Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología. |
dc.creator.none.fl_str_mv | Fernández Calero, Tamara Davyt Borthagaray, Marcos Perelmuter, Karen Chalar, Cora Bampi, G. Persson, H. Tosar Rovira, Juan Pablo Hafstað, V. Naya Monteverde, Hugo Mario Rovira, Carlos Bollati-Fogolín, Mariela Ehrlich, Ricardo Flouriot, Gilles Ignatova, Z. Marín Gutiérrez, Mónica |
dc.date.accessioned.none.fl_str_mv | 2022-05-31T13:08:04Z |
dc.date.available.none.fl_str_mv | 2022-05-31T13:08:04Z |
dc.date.issued.none.fl_str_mv | 2020 |
dc.description.abstract.none.fl_txt_mv | Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targets |
dc.format.extent.es.fl_str_mv | 20 h. |
dc.format.mimetype.es.fl_str_mv | application/pdf |
dc.identifier.citation.es.fl_str_mv | Fernández-Calero, T, Davyt Borthagaray, M, Perelmuter, K, [y otros] "Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells". Cancer and Metabolism. [en línea] 2020, 8: 8. 20 h. DOI: 10.1186/s40170-020-00216-7 |
dc.identifier.doi.none.fl_str_mv | 10.1186/s40170-020-00216-7 |
dc.identifier.issn.none.fl_str_mv | 2049-3002 |
dc.identifier.uri.none.fl_str_mv | https://hdl.handle.net/20.500.12008/31741 |
dc.language.iso.none.fl_str_mv | en eng |
dc.publisher.es.fl_str_mv | BMC |
dc.relation.ispartof.es.fl_str_mv | Cancer and Metabolism, 2020, 8: 8 |
dc.rights.license.none.fl_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
dc.source.none.fl_str_mv | reponame:COLIBRI instname:Universidad de la República instacron:Universidad de la República |
dc.subject.es.fl_str_mv | Breast cancer EMT Luminal to basal transition MKL1/actin signaling pathway Metabolism adaptation Translation machinery Ribosome profiling Breast cancer stem cells |
dc.title.none.fl_str_mv | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
dc.type.es.fl_str_mv | Artículo |
dc.type.none.fl_str_mv | info:eu-repo/semantics/article |
dc.type.version.none.fl_str_mv | info:eu-repo/semantics/publishedVersion |
description | Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targets |
eu_rights_str_mv | openAccess |
format | article |
id | COLIBRI_09e5bf3ac37d0c0b22070b0a0fd587df |
identifier_str_mv | Fernández-Calero, T, Davyt Borthagaray, M, Perelmuter, K, [y otros] "Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells". Cancer and Metabolism. [en línea] 2020, 8: 8. 20 h. DOI: 10.1186/s40170-020-00216-7 2049-3002 10.1186/s40170-020-00216-7 |
instacron_str | Universidad de la República |
institution | Universidad de la República |
instname_str | Universidad de la República |
language | eng |
language_invalid_str_mv | en |
network_acronym_str | COLIBRI |
network_name_str | COLIBRI |
oai_identifier_str | oai:colibri.udelar.edu.uy:20.500.12008/31741 |
publishDate | 2020 |
reponame_str | COLIBRI |
repository.mail.fl_str_mv | mabel.seroubian@seciu.edu.uy |
repository.name.fl_str_mv | COLIBRI - Universidad de la República |
repository_id_str | 4771 |
rights_invalid_str_mv | Licencia Creative Commons Atribución (CC - By 4.0) |
spelling | Fernández Calero Tamara, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Davyt Borthagaray Marcos, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Perelmuter Karen, Instituto Pasteur (Montevideo).Chalar Cora, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Bampi G.Persson H.Tosar Rovira Juan Pablo, IUniversidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Hafstað V.Naya Monteverde Hugo Mario, Instituto Pasteur (Montevideo).Rovira CarlosBollati-Fogolín Mariela, InstitutoPasteur (Montevideo).Ehrlich Ricardo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Flouriot GillesIgnatova Z.Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.2022-05-31T13:08:04Z2022-05-31T13:08:04Z2020Fernández-Calero, T, Davyt Borthagaray, M, Perelmuter, K, [y otros] "Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells". Cancer and Metabolism. [en línea] 2020, 8: 8. 20 h. DOI: 10.1186/s40170-020-00216-72049-3002https://hdl.handle.net/20.500.12008/3174110.1186/s40170-020-00216-7Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targetsSubmitted by Verdun Juan Pablo (jverdun@fcien.edu.uy) on 2022-05-30T22:47:08Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1186s40170-020-00216-7.pdf: 2688929 bytes, checksum: 872085febeb329d951a9345c04204f79 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-05-31T13:02:51Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1186s40170-020-00216-7.pdf: 2688929 bytes, checksum: 872085febeb329d951a9345c04204f79 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-05-31T13:08:04Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1186s40170-020-00216-7.pdf: 2688929 bytes, checksum: 872085febeb329d951a9345c04204f79 (MD5) Previous issue date: 202020 h.application/pdfenengBMCCancer and Metabolism, 2020, 8: 8Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)Breast cancerEMTLuminal to basal transitionMKL1/actin signaling pathwayMetabolism adaptationTranslation machineryRibosome profilingBreast cancer stem cellsFine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cellsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFernández Calero, TamaraDavyt Borthagaray, MarcosPerelmuter, KarenChalar, CoraBampi, G.Persson, H.Tosar Rovira, Juan PabloHafstað, V.Naya Monteverde, Hugo MarioRovira, CarlosBollati-Fogolín, MarielaEhrlich, RicardoFlouriot, GillesIgnatova, Z.Marín Gutiérrez, MónicaLICENSElicense.txtlicense.txttext/plain; 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- Universidad de la Repúblicafalse |
spellingShingle | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells Fernández Calero, Tamara Breast cancer EMT Luminal to basal transition MKL1/actin signaling pathway Metabolism adaptation Translation machinery Ribosome profiling Breast cancer stem cells |
status_str | publishedVersion |
title | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
title_full | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
title_fullStr | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
title_full_unstemmed | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
title_short | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
title_sort | Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells |
topic | Breast cancer EMT Luminal to basal transition MKL1/actin signaling pathway Metabolism adaptation Translation machinery Ribosome profiling Breast cancer stem cells |
url | https://hdl.handle.net/20.500.12008/31741 |