Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells

Fernández Calero, Tamara - Davyt Borthagaray, Marcos - Perelmuter, Karen - Chalar, Cora - Bampi, G. - Persson, H. - Tosar Rovira, Juan Pablo - Hafstað, V. - Naya Monteverde, Hugo Mario - Rovira, Carlos - Bollati-Fogolín, Mariela - Ehrlich, Ricardo - Flouriot, Gilles - Ignatova, Z. - Marín Gutiérrez, Mónica

Resumen:

Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targets


Detalles Bibliográficos
2020
Breast cancer
EMT
Luminal to basal transition
MKL1/actin signaling pathway
Metabolism adaptation
Translation machinery
Ribosome profiling
Breast cancer stem cells
Inglés
Universidad de la República
COLIBRI
https://hdl.handle.net/20.500.12008/31741
Acceso abierto
Licencia Creative Commons Atribución (CC - By 4.0)
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author Fernández Calero, Tamara
author2 Davyt Borthagaray, Marcos
Perelmuter, Karen
Chalar, Cora
Bampi, G.
Persson, H.
Tosar Rovira, Juan Pablo
Hafstað, V.
Naya Monteverde, Hugo Mario
Rovira, Carlos
Bollati-Fogolín, Mariela
Ehrlich, Ricardo
Flouriot, Gilles
Ignatova, Z.
Marín Gutiérrez, Mónica
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author_facet Fernández Calero, Tamara
Davyt Borthagaray, Marcos
Perelmuter, Karen
Chalar, Cora
Bampi, G.
Persson, H.
Tosar Rovira, Juan Pablo
Hafstað, V.
Naya Monteverde, Hugo Mario
Rovira, Carlos
Bollati-Fogolín, Mariela
Ehrlich, Ricardo
Flouriot, Gilles
Ignatova, Z.
Marín Gutiérrez, Mónica
author_role author
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collection COLIBRI
dc.contributor.filiacion.none.fl_str_mv Fernández Calero Tamara, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Davyt Borthagaray Marcos, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Perelmuter Karen, Instituto Pasteur (Montevideo).
Chalar Cora, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Bampi G.
Persson H.
Tosar Rovira Juan Pablo, IUniversidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Hafstað V.
Naya Monteverde Hugo Mario, Instituto Pasteur (Montevideo).
Rovira Carlos
Bollati-Fogolín Mariela, InstitutoPasteur (Montevideo).
Ehrlich Ricardo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
Flouriot Gilles
Ignatova Z.
Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.
dc.creator.none.fl_str_mv Fernández Calero, Tamara
Davyt Borthagaray, Marcos
Perelmuter, Karen
Chalar, Cora
Bampi, G.
Persson, H.
Tosar Rovira, Juan Pablo
Hafstað, V.
Naya Monteverde, Hugo Mario
Rovira, Carlos
Bollati-Fogolín, Mariela
Ehrlich, Ricardo
Flouriot, Gilles
Ignatova, Z.
Marín Gutiérrez, Mónica
dc.date.accessioned.none.fl_str_mv 2022-05-31T13:08:04Z
dc.date.available.none.fl_str_mv 2022-05-31T13:08:04Z
dc.date.issued.none.fl_str_mv 2020
dc.description.abstract.none.fl_txt_mv Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targets
dc.format.extent.es.fl_str_mv 20 h.
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dc.identifier.citation.es.fl_str_mv Fernández-Calero, T, Davyt Borthagaray, M, Perelmuter, K, [y otros] "Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells". Cancer and Metabolism. [en línea] 2020, 8: 8. 20 h. DOI: 10.1186/s40170-020-00216-7
dc.identifier.doi.none.fl_str_mv 10.1186/s40170-020-00216-7
dc.identifier.issn.none.fl_str_mv 2049-3002
dc.identifier.uri.none.fl_str_mv https://hdl.handle.net/20.500.12008/31741
dc.language.iso.none.fl_str_mv en
eng
dc.publisher.es.fl_str_mv BMC
dc.relation.ispartof.es.fl_str_mv Cancer and Metabolism, 2020, 8: 8
dc.rights.license.none.fl_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:COLIBRI
instname:Universidad de la República
instacron:Universidad de la República
dc.subject.es.fl_str_mv Breast cancer
EMT
Luminal to basal transition
MKL1/actin signaling pathway
Metabolism adaptation
Translation machinery
Ribosome profiling
Breast cancer stem cells
dc.title.none.fl_str_mv Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
dc.type.es.fl_str_mv Artículo
dc.type.none.fl_str_mv info:eu-repo/semantics/article
dc.type.version.none.fl_str_mv info:eu-repo/semantics/publishedVersion
description Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targets
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identifier_str_mv Fernández-Calero, T, Davyt Borthagaray, M, Perelmuter, K, [y otros] "Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells". Cancer and Metabolism. [en línea] 2020, 8: 8. 20 h. DOI: 10.1186/s40170-020-00216-7
2049-3002
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institution Universidad de la República
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language eng
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publishDate 2020
reponame_str COLIBRI
repository.mail.fl_str_mv mabel.seroubian@seciu.edu.uy
repository.name.fl_str_mv COLIBRI - Universidad de la República
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rights_invalid_str_mv Licencia Creative Commons Atribución (CC - By 4.0)
spelling Fernández Calero Tamara, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Davyt Borthagaray Marcos, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Perelmuter Karen, Instituto Pasteur (Montevideo).Chalar Cora, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Bampi G.Persson H.Tosar Rovira Juan Pablo, IUniversidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Hafstað V.Naya Monteverde Hugo Mario, Instituto Pasteur (Montevideo).Rovira CarlosBollati-Fogolín Mariela, InstitutoPasteur (Montevideo).Ehrlich Ricardo, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.Flouriot GillesIgnatova Z.Marín Gutiérrez Mónica, Universidad de la República (Uruguay). Facultad de Ciencias. Instituto de Biología.2022-05-31T13:08:04Z2022-05-31T13:08:04Z2020Fernández-Calero, T, Davyt Borthagaray, M, Perelmuter, K, [y otros] "Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells". Cancer and Metabolism. [en línea] 2020, 8: 8. 20 h. DOI: 10.1186/s40170-020-00216-72049-3002https://hdl.handle.net/20.500.12008/3174110.1186/s40170-020-00216-7Background: During breast cancer progression, the epithelial to mesenchymal transition has been associated with metastasis and endocrine therapy resistance; however, the underlying mechanisms remain elusive. To gain insight into this process, we studied the transition undergone by MCF7-derived cells, which is driven by the constitutive nuclear expression of a MKL1 variant devoid of the actin-binding domain (MKL1 ΔN200). We characterized the adaptive changes that occur during the MKL1-induced cellular model and focused on regulation of translation machinery and metabolic adaptation. Methods: We performed a genome-wide analysis at the transcriptional and translational level using ribosome profiling complemented with RNA-Seq and analyzed the expression of components of the translation machinery and enzymes involved in energy metabolism. NGS data were correlated with metabolomic measurements and quantification of specific mRNAs extracted from polysomes and western blots. Results: Our results reveal the expression profiles of a luminal to basal-like state in accordance with an epithelial to mesenchymal transition. During the transition, the synthesis of ribosomal proteins and that of many translational factors was upregulated. This overexpression of the translational machinery appears to be regulated at the translational level. Our results indicate an increase of ribosome biogenesis and translation activity. We detected an extensive metabolic rewiring occurring in an already “Warburg-like” context, in which enzyme isoform switches and metabolic shunts indicate a crucial role of HIF-1α along with other master regulatory factors. Furthermore, we detected a decrease in the expression of enzymes involved in ribonucleotide synthesis from the pentose phosphate pathway. During this transition, cells increase in size, downregulate genes associated with proliferation, and strongly upregulate expression of cytoskeletal and extracellular matrix genes.Conclusions: Our study reveals multiple regulatory events associated with metabolic and translational machinery adaptation during an epithelial mesenchymal-like transition process. During this major cellular transition, cells achieve a new homeostatic state ensuring their survival. This work shows that ribosome profiling complemented with RNA-Seq is a powerful approach to unveil in-depth global adaptive cellular responses and the interconnection among regulatory circuits, which will be helpful for identification of new therapeutic targetsSubmitted by Verdun Juan Pablo (jverdun@fcien.edu.uy) on 2022-05-30T22:47:08Z No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1186s40170-020-00216-7.pdf: 2688929 bytes, checksum: 872085febeb329d951a9345c04204f79 (MD5)Approved for entry into archive by Faget Cecilia (lfaget@fcien.edu.uy) on 2022-05-31T13:02:51Z (GMT) No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1186s40170-020-00216-7.pdf: 2688929 bytes, checksum: 872085febeb329d951a9345c04204f79 (MD5)Made available in DSpace by Luna Fabiana (fabiana.luna@seciu.edu.uy) on 2022-05-31T13:08:04Z (GMT). No. of bitstreams: 2 license_rdf: 19875 bytes, checksum: 9fdbed07f52437945402c4e70fa4773e (MD5) 10.1186s40170-020-00216-7.pdf: 2688929 bytes, checksum: 872085febeb329d951a9345c04204f79 (MD5) Previous issue date: 202020 h.application/pdfenengBMCCancer and Metabolism, 2020, 8: 8Las obras depositadas en el Repositorio se rigen por la Ordenanza de los Derechos de la Propiedad Intelectual de la Universidad de la República.(Res. Nº 91 de C.D.C. de 8/III/1994 – D.O. 7/IV/1994) y por la Ordenanza del Repositorio Abierto de la Universidad de la República (Res. Nº 16 de C.D.C. de 07/10/2014)info:eu-repo/semantics/openAccessLicencia Creative Commons Atribución (CC - By 4.0)Breast cancerEMTLuminal to basal transitionMKL1/actin signaling pathwayMetabolism adaptationTranslation machineryRibosome profilingBreast cancer stem cellsFine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cellsArtículoinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionreponame:COLIBRIinstname:Universidad de la Repúblicainstacron:Universidad de la RepúblicaFernández Calero, TamaraDavyt Borthagaray, MarcosPerelmuter, KarenChalar, CoraBampi, G.Persson, H.Tosar Rovira, Juan PabloHafstað, V.Naya Monteverde, Hugo MarioRovira, CarlosBollati-Fogolín, MarielaEhrlich, RicardoFlouriot, GillesIgnatova, Z.Marín Gutiérrez, MónicaLICENSElicense.txtlicense.txttext/plain; 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- Universidad de la Repúblicafalse
spellingShingle Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
Fernández Calero, Tamara
Breast cancer
EMT
Luminal to basal transition
MKL1/actin signaling pathway
Metabolism adaptation
Translation machinery
Ribosome profiling
Breast cancer stem cells
status_str publishedVersion
title Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
title_full Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
title_fullStr Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
title_full_unstemmed Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
title_short Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
title_sort Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells
topic Breast cancer
EMT
Luminal to basal transition
MKL1/actin signaling pathway
Metabolism adaptation
Translation machinery
Ribosome profiling
Breast cancer stem cells
url https://hdl.handle.net/20.500.12008/31741