Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus.
- Autor(es):
- MENA, E. ; GARAYCOCHEA, S. ; STEWART, S. ; MONTESANO, M. ; PONCE DE LEÓN, I.
- Tipo:
- Artículo
- Versión:
- Publicado
- Resumen:
-
ABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights into the molecular basis of pathogenicity strategies used by D. caulivora and other Diaporthe species.Results: In the present work, the nuclear genome of D. caulivora isolate (D57) was resolved, and a comprehensive annotation based on gene expression and genomic analysis is provided. Diaporthe caulivora D57 has an estimated size of 57,86?Mb and contains 18,385 predicted protein-coding genes, from which 1501 encode predicted secreted proteins. A large array of D. caulivora genes encoding secreted pathogenicity-related proteins was identified, including carbohydrate-active enzymes (CAZymes), necrosis-inducing proteins, oxidoreductases, proteases and effector candidates.
- Año:
- 2022
- Idioma:
- Inglés
- Temas:
- Diaporthe pathogens
Effectors
Genomes
Pathogenicity factors
RNAseq
Secretome
Soybean
- Institución:
- Instituto Nacional de Investigación Agropecuaria
- Repositorio:
- Ainfo
- Enlace(s):
- http://www.ainfo.inia.uy/consulta/busca?b=pc&id=62833&biblioteca=vazio&busca=62833&qFacets=62833
- Nivel de acceso:
- Acceso abierto